PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g07560
Common NameGSCOC_T00022583001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 478aa    MW: 53566.5 Da    PI: 4.8603
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g07560genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00063161177117
                  EEETTTTEEESSHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                  y+Cp+Cgk+++  + L+
  Cc04_g07560 161 YVCPNCGKRYNALDALR 177
                  9*********9998885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5134434.2646138IPR017919Transcription factor TFE/TFIIEalpha HTH domain
SMARTSM005311.8E-6438209IPR002853Transcription initiation factor IIE subunit alpha, N-terminal
SuperFamilySSF467851.45E-54096IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF020021.1E-64097IPR024550TFIIEalpha/SarR/Rpc3 HTH domain
Gene3DG3DSA:1.10.10.101.6E-442100IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:3.30.40.103.9E-21147206IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF577839.18E-9148200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006367Biological Processtranscription initiation from RNA polymerase II promoter
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MSVEPFNRLV KLAARAFYDD ITTKGDNQPK TGRSDNRGIA VVVLDALTRR QWVREEDLAK  60
DLKLHSKQLR RTLRFFEEEK LVTRDHRKET AKGAKVYNAA VAATADGHHN GREGDEKIKM  120
HTHSYCCLDY AQIYDVVRYR LHRMRKKLKD ELDNKNTVQE YVCPNCGKRY NALDALRLVS  180
MLDEYFHCEI CNGELVAESE KLTAQEMGDG DDNARRRRRD KLEDMLKKME TQLKPLMDQL  240
NRVKDLPVPE FGNLQAWEAR ASAAARAANG DLNGNDPSKS AQGLGFGGTP MPFLGDTKVE  300
VDFSGTEEKG ENIKSDSGST PMKVLPPWMI KQGMILTKEQ RGEVKEEAKM DGSSAPAGSS  360
DEKKSAAETD VKNIQDEYFK AYYAALLQRQ HEQEAALREQ GLPNSSISNG AADTSFERQV  420
GLKSKRDDQD DGDDVEWEEA APEGNTTSEN FKVNDLNVQA DASGDDDEDD GLDWEEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fyw_W4e-13924512191TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA
5fz5_W4e-13924512191TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA
5oqm_W4e-13924512191Transcription factor TFIIE subunit
5sva_h4e-13924512191Transcription initiation factor IIE subunit alpha
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215220RRRRDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027126210.10.0general transcription factor IIE subunit 1 isoform X2
TrEMBLA0A068TQ740.0A0A068TQ74_COFCA; Uncharacterized protein
STRINGGorai.007G172700.10.0(Gossypium raimondii)