PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc04_g07540

Common Name

GSCOC_T00022579001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 385aa MW: 43813.9 Da PI: 8.0548

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc04_g07540	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.5	9.6e-38	122	277	4	133
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssa.......seceaess 78 kdrhski T+ g+RdRR+Rls+++a++fFdLqd LGfdk+skt++WLl+q+ ai e+++ ss+s+ + Cc04_g07540 122 NKDRHSKINTAHGPRDRRMRLSLPVARKFFDLQDVLGFDKASKTVDWLLRQSSSAIEEIMRGlprmrhsrsvgantsvSSTSEgevvsgiE------- 212 79*********************************************************999887777666544331111121221111....... PP TCP 79 sssasnsssg.................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 +s++ k++++++k+ k +++a + la+esr+ ar+rar+rt ek ++ Cc04_g07540 213 ------DSIRdtthdnqqanisvkmkaKSSSKKEKKAKLVRRTA-LHRLARESRKVARERARKRTIEKRKLG 277 ......11113333333455667776444444445555555555.899*****************98865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.9E-41	121	274	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.854	122	180	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	8.803	256	273	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048831	Biological Process	regulation of shoot system development

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MYPSSTNCTH NPIPFSWESV EHRPLFHSDI NPNSKFEDPL LTSLFHFASP CIYEDAVNEF 60 PWQQLDDTYL YQQQLSTAEN SLAEIVNHMA DPNSDPVHGL KQDWNKNGES TGEKVTRKRL 120 SNKDRHSKIN TAHGPRDRRM RLSLPVARKF FDLQDVLGFD KASKTVDWLL RQSSSAIEEI 180 MRGLPRMRHS RSVGANTSVS STSEGEVVSG IEDSIRDTTH DNQQANISVK MKAKSSSKKE 240 KKAKLVRRTA LHRLARESRK VARERARKRT IEKRKLGESR LCFAARDRES WGSFETDEGS 300 GTPAQKIHPS IEGLTEVEEL NPHERRLLET REYAAGEILL TTGNWNPSTI PVYQQNTEIS 360 NEHQFSDFQF CGKVWEAYDM SLGG*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MYPSSTNCTH NPIPFSWESV EHRPLFHSDI NPNSKFEDPL LTSLFHFASP CIYEDAVNEF  60
PWQQLDDTYL YQQQLSTAEN SLAEIVNHMA DPNSDPVHGL KQDWNKNGES TGEKVTRKRL  120
SNKDRHSKIN TAHGPRDRRM RLSLPVARKF FDLQDVLGFD KASKTVDWLL RQSSSAIEEI  180
MRGLPRMRHS RSVGANTSVS STSEGEVVSG IEDSIRDTTH DNQQANISVK MKAKSSSKKE  240
KKAKLVRRTA LHRLARESRK VARERARKRT IEKRKLGESR LCFAARDRES WGSFETDEGS  300
GTPAQKIHPS IEGLTEVEEL NPHERRLLET REYAAGEILL TTGNWNPSTI PVYQQNTEIS  360
NEHQFSDFQF CGKVWEAYDM SLGG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027121771.1	0.0	transcription factor CYCLOIDEA-like
TrEMBL	A0A068TT00	0.0	A0A068TT00_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2482	22	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	2e-24	TCP domain protein 12