PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g07160
Common NameGSCOC_T00022522001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family CO-like
Protein Properties Length: 432aa    MW: 48739.6 Da    PI: 4.6222
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g07160genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.81.3e-091658339
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                 +r C+ + +k++++fC  ++ +lC+ C ++ H+       H++
  Cc04_g07160 16 ARACDSCLKKRARWFCAADDAFLCQACDTSVHSAnqlasrHER 58
                 578*****************************65777777776 PP
2CCT68.81.5e-23375418144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Cc04_g07160 375 REARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 418
                  9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.2E-111461IPR000315B-box-type zinc finger
PROSITE profilePS5011911.0071461IPR000315B-box-type zinc finger
PfamPF006433.3E-81659IPR000315B-box-type zinc finger
CDDcd000214.56E-91761No hitNo description
PROSITE profilePS5101716.122375417IPR010402CCT domain
PfamPF062035.8E-18375417IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MITEGKTANV LGGKTARACD SCLKKRARWF CAADDAFLCQ ACDTSVHSAN QLASRHERIR  60
LATSSFMPIE TKGDENSLPT WHQGFTRKAR TPRNNKASLV HQPKDEEKMA KANPLPLVPE  120
ISGDETSPDE SEEQHLFCRV PVFDPFAAEL CSELSDEVQN IQADKGTHDE ILTSNELNVL  180
LNDDQDLDIP ELIASDAELA EFAADVESLL GTGLDEDSCH MEDPGMMVCK EEDDVVDVSF  240
EDKLVKVEDE DDQEVQAVIA CHLDPALDMA RESLNWDFDS SSPVIEEEEE LKVTKDMPDK  300
DIKSKEEERR MMHLKLNYEE VITAWASQGS PWADGTKPEF NLGDCWPDFM GMSLNELHHP  360
NGAGGGRVSS HDEEREARVT RYREKRRTRL FSKKIRYEVR KLNAEKRPRM KGRFVKRTSF  420
AGPSFPYLMK K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385401RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027167869.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A068TQ360.0A0A068TQ36_COFCA; Uncharacterized protein
STRINGEOY210201e-156(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.15e-79B-box type zinc finger protein with CCT domain