PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc04_g07130

Common Name

GSCOC_T00022518001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 275aa MW: 29571.4 Da PI: 6.8295

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc04_g07130	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.8	2e-29	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C + p++ p++q++++ +++k++G++ +l+l++a p++ r+ +++sl+yeA+ r+ +P+yG++g++++++++l+q+++e Cc04_g07130 4 SCNGCRVLRKGCSEKCSIKPCLhwiksPEAQANATVFLAKFYGRAGLLNLINAGPDHLRPGIFRSLLYEACGRIVNPIYGSTGLLWSGNWHLCQAAVE 101 6************************************************************************************************* PP DUF260 94 lallke 99 ++l ++ Cc04_g07130 102 AVLSGS 107 998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.407	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-23	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSEKCS IKPCLHWIKS PEAQANATVF LAKFYGRAGL LNLINAGPDH 60 LRPGIFRSLL YEACGRIVNP IYGSTGLLWS GNWHLCQAAV EAVLSGSPIS QVSADSAACT 120 VCPPLKAGDI RHVSKDENSA GSAARDLHKV KCSKGKFKRA GVKQPKVRVE SPDVDNAARV 180 MWSWSHKEEE EEEEVVGSPS RDSGVSQHVE PPSRGCECGD ADSASVETVE ESLVKPDEPA 240 DGSDVELELT LGFEPVLCRQ RKVGRQESDG GVNK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027124508.1	0.0	LOB domain-containing protein 41-like
Swissprot	Q9M886	1e-83	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A068TQW5	0.0	A0A068TQW5_COFCA; Uncharacterized protein
STRING	XP_009630484.1	1e-119	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	3e-85	LOB domain-containing protein 41