PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc04_g07090

Common Name

GSCOC_T00022514001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

NAC

Protein Properties

Length: 327aa MW: 36576 Da PI: 7.6142

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc04_g07090	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.5	4.4e-56	5	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL +kv++ ++ ++i++vd++k+ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ +g Cc04_g07090 5 LPPGFRFHPTDEELISYYLSNKVSDFGFTS-KAITDVDLNKSEPWDLPAKASMGEKEWYFFSLRDRKYPTGMRTNRATEAGYWKTTGKDKEIFR-GGV 100 79***********************999.88***********999999************************************.* PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfy+grapkgekt+Wvmheyrle Cc04_g07090 101 LVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 131 *****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-64	3	151	IPR003441	NAC domain
PROSITE profile	PS51005	60.557	5	151	IPR003441	NAC domain
Pfam	PF02365	7.0E-29	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MEESLPPGFR FHPTDEELIS YYLSNKVSDF GFTSKAITDV DLNKSEPWDL PAKASMGEKE 60 WYFFSLRDRK YPTGMRTNRA TEAGYWKTTG KDKEIFRGGV LVGMKKTLVF YRGRAPKGEK 120 TNWVMHEYRL ETKLAFKTSK EEWVVCRVFQ KTATVKKPQA APSSPQSLES PCDTNTFANE 180 LGDIELPNFS TLAVNSANGI FSNISPQTFS TDNLNNAFNW AALRDAANAL PSLSSWPSPS 240 LLSTANLAMS APLLLRALQM RNYQPREATT ASADYSFMPQ GMISNQFGND FSSHLAASSS 300 SNRVLDHHSV QQQSQEQPFN LDSNIW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-57	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-57	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-57	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-57	4	157	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-57	4	157	19	174	NAC domain-containing protein 19
3swm_B	2e-57	4	157	19	174	NAC domain-containing protein 19
3swm_C	2e-57	4	157	19	174	NAC domain-containing protein 19
3swm_D	2e-57	4	157	19	174	NAC domain-containing protein 19
3swp_A	2e-57	4	157	19	174	NAC domain-containing protein 19
3swp_B	2e-57	4	157	19	174	NAC domain-containing protein 19
3swp_C	2e-57	4	157	19	174	NAC domain-containing protein 19
3swp_D	2e-57	4	157	19	174	NAC domain-containing protein 19
4dul_A	1e-57	4	157	16	171	NAC domain-containing protein 19
4dul_B	1e-57	4	157	16	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00364	DAP	Transfer from AT3G18400	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027124647.1	0.0	NAC domain-containing protein 46-like
Refseq	XP_027167280.1	0.0	NAC domain-containing protein 46
TrEMBL	A0A068TSV3	0.0	A0A068TSV3_COFCA; Uncharacterized protein
STRING	POPTR_0015s03700.1	1e-151	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-107	NAC domain containing protein 58