PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g04950
Common NameGSCOC_T00022234001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 325aa    MW: 34833.5 Da    PI: 8.1694
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g04950genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042138160123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C + F ++  L  H++ H
  Cc04_g04950 138 FSCNYCQRKFCSSQALGGHQNAH 160
                  89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.39E-6135165No hitNo description
PROSITE profilePS5015711.323138165IPR007087Zinc finger, C2H2
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MKAKTTRKEA CDLSHETSAS SSSSSTIASL SDTNSLACPN NSSSMDSPKL EEVQHQNHKQ  60
EDDDEDVKTP HLALDLSLAS AKDLKPELNL IDCLHNSMGV SSQINHPSST SASTDAINPL  120
GVNNNSASNN QEPERRVFSC NYCQRKFCSS QALGGHQNAH KRERTIAKRG NRIGGSTGGA  180
SSSSAAAAFG HDSLLQRYPS MASLPLHGSF NNNRSLGIQA HSMIHKPAYF ASNHVGFSPM  240
YGQAGWSRKP LDQQPAIGRL APENYHMGSS SIGGAARFDT NINQKFSTPV VEGIGVSYKW  300
DSGPPPNLKT SQEELKKLDL SLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027121868.10.0zinc finger protein 1-like
TrEMBLA0A068TQN40.0A0A068TQN4_COFCA; Uncharacterized protein
STRINGXP_002527314.12e-78(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58272233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.12e-39zinc finger protein 3