PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g03460
Common NameGSCOC_T00022041001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 373aa    MW: 42774.7 Da    PI: 4.3091
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g03460genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.81.8e-15138222286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  W+++e+  L++a  ++  + +r++l+   W+ev++k+ ++ ++ r+ +qC+++++ l+k+ykk+k+  ++ t + +s+++yf++++
  Cc04_g03460 138 WSEHETFILLDAWGDKFLQHGRKSLRSEEWQEVAEKVsQQSKIDRTDTQCRNRLDTLKKKYKKEKAKLGE-TVNFVSKWVYFQKMD 222
                  *************************************778899**************************9.578888********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-22137224No hitNo description
PROSITE profilePS500906.226138195IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.2E-5153207IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDDTEDDARY PPNTYGMSQG YGSSNRQKLP VRNAGQNVIN QYVEDDDVDD EEEEVEDEEE  60
DDDNEENGVQ RVERDEFDDD NEDDDDDDYG DMQRHPKKRK LKSLLSSYEF APRVPATSAA  120
PVPVPKPSFG GRNAVADWSE HETFILLDAW GDKFLQHGRK SLRSEEWQEV AEKVSQQSKI  180
DRTDTQCRNR LDTLKKKYKK EKAKLGETVN FVSKWVYFQK MDMLLSSPPQ QAGLSCGVDS  240
GEYVFMNPGE YLNRSNGLDE MRDSPGISES AEAEEDDSEG LPPKRTKTVR DRGNGASFKL  300
LADSIEKFSE IYEKIENSKR QQILELEKMR MDFHRELELQ KRQILERAQA EIAKIRQGDD  360
EDNDVSAENI SR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027123114.10.0trihelix transcription factor ASIL2-like
RefseqXP_027123115.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A068TP070.0A0A068TP07_COFCA; Uncharacterized protein
STRINGXP_009609888.11e-171(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72302431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.17e-71Trihelix family protein