PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g02910
Common NameGSCOC_T00021974001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 322aa    MW: 34520.3 Da    PI: 8.0305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g02910genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.10.000182122501255
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Cc04_g02910 212 RKEKLGDRITALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 250
                  6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.30E-6195254No hitNo description
PROSITE profilePS5088811.56200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-10210260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-8214257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAGNPNWWSM NSMHPQSHQH QQFPSTTTFH SPAPPPPPPP VPPQYNLYGG SSSPLSANSL  60
SDHHPNPDFP RSWRQLLLGG LANEQERFVG SPFQNKKLEN WEGQTLNPSL RVPVSDVKQE  120
VALSTSVLFG AAADEEFQAS TRPSWSQVVQ ASSPTSCVTS LSSNLLNFSS SKTEGRNQNP  180
ENSSECNSSI AGGVSKKPRI QHSTAQPALK VRKEKLGDRI TALHQLVSPF GKTDTASVLS  240
EAIGYIRFLQ AQIEALSSPY LGNASGVSGS MGQGHQQQSV VQDRPKDLKS RGLCLVPISC  300
TQHVGSDNGA DYWAPALGGG F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027126564.10.0transcription factor bHLH68-like isoform X1
SwissprotQ8S3D12e-54BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A068TNU70.0A0A068TNU7_COFCA; Uncharacterized protein
STRINGEOY268441e-115(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15192247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.19e-52bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]