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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cc04_g02680 |
| Common Name | GSCOC_T00021945001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
| Family |
GATA |
| Protein Properties |
Length: 375aa MW: 40828.7 Da PI: 6.5594 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc04_g02680 | genome | CGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 54.3 | 1.9e-17 | 258 | 292 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C +Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
Cc04_g02680 258 CLHCGSEKTPQWRTGPMGPKTLCNACGVRYKSGRL 292
99*****************************9885 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 375 aa
Download sequence Send
to blast |
MEASSEFFVG GYFSHAGDNE FGHKSMENQN ITTGNSNNFT VDDLLDFPKE DEVMTDAFFD 60
SITGNSGESS SLTVVDSCNS SVSGGDRQFN GNISCRSFTD TQFSGSELCV PYDDLAELEW 120
LSNFVEESFS SDDLHNLHLI SPTTNFKAPS ASSAATANAT TDTSSSAATI STNNDNSNSS 180
SPVFPSDVSF PGKARSKRSR AAPCNWASRL LLLASPATSS SEPTNDVNTP NPISVTIKAP 240
KQAPSRKRET TETPGRQCLH CGSEKTPQWR TGPMGPKTLC NACGVRYKSG RLVPEYRPAA 300
SPTFVSAKHS NSHRKVLELR RQKELQRQQQ QQQQLLSQAS IFGVSNGGDE YLIRHHHHHH 360
PHQQNVGPDH RLMI*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. |
