PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g02340
Common NameGSCOC_T00021905001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 424aa    MW: 46466.9 Da    PI: 7.9143
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g02340genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.8e-08333373954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  Cc04_g02340 333 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 373
                  69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-14329384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-13330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-12332383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-5333373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-4346378No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MVPNSSGYAF LGGKVDIPED IFNTIQLLQR TGSPNFKTCR GSQSFQHSAP AFNPPIQVLS  60
SWNFSLQQEA TKLAGDDEVP RKSSVAEISS PIPNRADFIN QLNGLFFDYD TSNKSIINTC  120
LQEAKAGLIA TATGSTESLD CLLSGSNSNT DTTSVEDDAD ISMIFSDCKT LWNFRAVNGV  180
SSGESACDSS NAKDSNNHNR IKELDETASK TTSSGQHASQ LPRHATKRSS ETLLQNLVRS  240
DSSNSFQLIS ENEPKPKKPR SEKRPTSSNI SFQQPSSSIT SAGGEPDSEA IAQMKEMIYR  300
AAAFRPVNFG MEVMEKPKRK NVRISTDPQT VAARQRRERI SERIRVLQRL VPGGSKMDTA  360
SMLDEAANYL KFLRSQVKAL EALGQKNEES LLNYPSIPFN HSFPVVTSNF PLHNPNIVNH  420
PKI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333338RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027126810.10.0transcription factor bHLH87
RefseqXP_027126811.10.0transcription factor bHLH87
RefseqXP_027126812.10.0transcription factor bHLH87
SwissprotQ8S3D23e-85BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A068TRF60.0A0A068TRF6_COFCA; Uncharacterized protein
STRINGVIT_09s0002g02700.t011e-113(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43502242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]