PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g01870
Common NameGSCOC_T00021849001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 529aa    MW: 56650.5 Da    PI: 9.2222
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g01870genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-0579101123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C++C+k F r  nL+ H r H
  Cc04_g01870  79 FICEICNKGFQRDQNLQLHRRGH 101
                  89*******************88 PP
2zf-C2H212.70.00039155177123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k++  +s+ k H +t+
  Cc04_g01870 155 WKCDKCSKRYAVQSDWKAHSKTC 177
                  58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.87E-778101No hitNo description
Gene3DG3DSA:3.30.160.601.4E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121716.4E-579101IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.84579101IPR007087Zinc finger, C2H2
SMARTSM003550.02279101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM00355240120150IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-4143176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.87E-7150175No hitNo description
SMARTSM00355140155175IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MSNLTSASNE ASVSSVNRND NGSGGSIYPP QQYFAPPNQT QVAQPQQAVK KKRNLPGNPD  60
PDAEVLALSP KTLLATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TNKEVKKKVY  120
VCPEASCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW KAHSKTCGTR  180
EYRCDCGTLF SRRDSFITHR AFCDALAEES ARAIPGNPLL SSQAAGSSTA PRHVNNINPL  240
QQQFGNQDNP HLFSLKKEQH TFNLRPEIPP WLACSPMPAG AGPGPGPPPV DLTSSIFPSP  300
RLGPGFSECH QELSLHENPN PNLGPNLPPF HPTTSPHISA TALLQKAAQM GAAMGSSKAG  360
AGGAAPPAVM LNTRPHQAHV SAAAADSATN ITTGNFGLNL SSREDLASGT FVNGLASYGN  420
KAVDPAAGGP PPPTSFLQDM MMNSLSSSSA TTGFEGSAFE DAFGGILNPK KTSNSIVGGG  480
NDRMTRDFLG LRPLSHSDIF NIAGFSNCMN TTASNEHHQN ASQKSWQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-35151212364Zinc finger protein JACKDAW
5b3h_F8e-35151212364Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027126921.10.0protein indeterminate-domain 7-like
RefseqXP_027167588.10.0protein indeterminate-domain 7
TrEMBLA0A068TNU10.0A0A068TNU1_COFCA; Uncharacterized protein
STRINGXP_009626387.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-112indeterminate(ID)-domain 2