PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc03_g14090 | ||||||||
Common Name | GSCOC_T00031796001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 136aa MW: 14900.2 Da PI: 8.6265 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.9 | 1.1e-05 | 41 | 73 | 18 | 55 |
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++l+ + +K + a++L +A+eYI+ Lq Cc03_g14090 41 EKITALQQLVSPY-----GKTDTASVLLEAMEYIRFLQ 73 6788888888888.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.0E-9 | 22 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.969 | 23 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-11 | 28 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0038 | 31 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.37E-5 | 43 | 77 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MMEHKRCPVS LDQSSLASLT PKRHKADISV LSKEKKEKVG EKITALQQLV SPYGKTDTAS 60 VLLEAMEYIR FLQEQVKVLS APYLCNTPTT TEQEQEPYSL RSRGLCLVPI SCTVGVASSN 120 GADIWAPIKT ASQKF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027117758.1 | 5e-96 | transcription factor bHLH153-like isoform X1 | ||||
Refseq | XP_027117759.1 | 3e-96 | transcription factor bHLH153-like isoform X2 | ||||
Swissprot | Q7XJU2 | 1e-59 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A068UR00 | 8e-95 | A0A068UR00_COFCA; Uncharacterized protein | ||||
STRING | XP_008222500.1 | 2e-71 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10428 | 8 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 2e-57 | bHLH family protein |
Publications ? help Back to Top | |||
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