PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc03_g09600 | ||||||||
Common Name | GSCOC_T00030944001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 472aa MW: 51309.5 Da PI: 6.3279 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.5 | 1.3e-09 | 282 | 329 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Cc03_g09600 282 AHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 329 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.53E-17 | 276 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.81E-11 | 276 | 333 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-17 | 278 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.682 | 278 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-6 | 282 | 329 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-11 | 284 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MERENLQMPY GSGIGGFHNN ELNCSSSEVQ FQNCFFNPSW DNSLDQNDPF ESALSSMVIC 60 NSGEISPQSY LGGGNNSTNT SCYSTPLNSP PKLNLSMMDH QIRGNLPIPG HHLPSHSSFA 120 PFPTDPGFAE RAARFSSSDR KFSKLSRSST PENTEFGDSR ENSSVSEQIT TGETGNNGQN 180 DANSRKRKSI ARGKAKEPPS SSNSAKDANG ASESNESNAK RSKSGEENAD EKDATKAMAD 240 TNGTDKAAGD GNQKQNKENS KPPEAPKDYI HVRARRGQAT DAHSLAERVR REKISERMKL 300 LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TINPRMEFNA EALVSKDVLH 360 SRGSLPHNMY SSEASAAGFP YPMQPQNGTN LPSAAIPNGQ DVPFSMNHLN AAISRNQGIH 420 LPPLDNFGEA ASQIPSFLED DLHTVVQMGF GQNQTQNFHG IMPTAQMKVE L* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 183 | 188 | SRKRKS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00376 | DAP | Transfer from AT3G23690 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027116989.1 | 0.0 | transcription factor bHLH77-like | ||||
TrEMBL | A0A068UP28 | 0.0 | A0A068UP28_COFCA; Uncharacterized protein | ||||
STRING | VIT_05s0029g00390.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1057 | 23 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23690.1 | 6e-78 | bHLH family protein |