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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cc03_g08510 |
Common Name | GSCOC_T00033272001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family |
HSF |
Protein Properties |
Length: 489aa MW: 54262.3 Da PI: 5.4864 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc03_g08510 | genome | CGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 107.9 | 7.6e-34 | 23 | 113 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98
Fl k+y++++d+++++++ ws + +sf+v+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F k+kk+ll++i+
Cc03_g08510 23 FLLKTYDMVDDSSTDDIVAWSLTRKSFIVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFVKDKKHLLKNIH 110
9********************888*****************************************999.........******************** PP
XXX CS
HSF_DNA-bind 99 rkk 101
r+k
Cc03_g08510 111 RRK 113
*98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 489 aa
Download sequence Send
to blast |
MEAAAAGLIS APGGGGGAGP APFLLKTYDM VDDSSTDDIV AWSLTRKSFI VWNPPEFARL 60 LLPTYFKHNN FSSFIRQLNT YGFRKIDPER WEFANEEFVK DKKHLLKNIH RRKPIHSHSN 120 PQGTVVDPER TAFEEEIDKL SREKAVLEGN VLRFKQQQST AKVQLEDLTQ RLSGMEKRQD 180 NLLTFLENAV QKPCFVELLS QKLESMDVSA YNKKRRLPQV DQTQYVQENM MVDDHSSSRP 240 EFGNNSIPQD FCNKLTLDLS PAVSDINLLS QSTQSSNEDG EISPKRISEG WPKDVQKCGE 300 TLYAPETLDL SDTGTSFGLK VDSPLPHKAA DAKSPQLHSF QPCLTSSEDG DGHISCHLNL 360 SLASSALPIG RSQSSAKVDH VVEETGKSSE ANLNADGNEA DLSIPMESRK HPDGDTTLSS 420 SQNKQQGPAT QARVNDVFWE QFLTEKPGSM DNEEASSNHR ASPYDEQEHK KLGRGLPRSI 480 KSAEHLSL*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |