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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc03_g05400 | ||||||||
Common Name | GSCOC_T00026291001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 171aa MW: 18803.6 Da PI: 9.254 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 25 | 76 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+ +g +r +lg+f taeeAa+a+++a+ +l+g+ Cc03_g05400 25 RYRGVRRRP-WGKYAAEIRDPTRQG--ARLWLGTFETAEEAARAYDKAAFNLRGH 76 6********.**********96544..**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 25.014 | 25 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-32 | 25 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-37 | 25 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-23 | 25 | 84 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-14 | 25 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.47E-29 | 25 | 84 | No hit | No description |
PRINTS | PR00367 | 1.2E-11 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MDGGSSSSRG KGMQGKEEKE KEDVRYRGVR RRPWGKYAAE IRDPTRQGAR LWLGTFETAE 60 EAARAYDKAA FNLRGHLAIL NFPNEYYSQL PSPPHYQPFS SSPSSAFSSS FLSRSSASSS 120 SSGAIQGFDQ RGSSSSSSTG QQKQVIELEY LDDSLLEELL EFGEKKKNGK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-30 | 22 | 86 | 11 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027115754.1 | 1e-120 | ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 2e-45 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A068TSN0 | 1e-119 | A0A068TSN0_COFCA; Uncharacterized protein | ||||
STRING | XP_009780511.1 | 1e-54 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 1e-30 | ERF family protein |
Publications ? help Back to Top | |||
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