PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g04820
Common NameGSCOC_T00026212001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 248aa    MW: 28295.3 Da    PI: 9.306
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g04820genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.4e-1090138255
                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   r+h ++Er RR++ +++f eL ++lP       +K +K +i+++A e I++Lq
  Cc03_g04820  90 NRKHVINERMRREKQKKSFVELHKMLPYG-----TKGDKNSIVRMAAERIQELQ 138
                  578************************97.....799999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-1386153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.00E-986139No hitNo description
PROSITE profilePS5088813.25688137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-891138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-1091152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-894143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEEYFFQHYS QGDEVLWFDG EVLPLPAVDG QYHGSSFVKY SNHPLQGFGS NGTVNHGRNG  60
RNANKRMIEL LKKRWKPPTI GAVEAERERN RKHVINERMR REKQKKSFVE LHKMLPYGTK  120
GDKNSIVRMA AERIQELQRC NEELKRRKFE LELALAAAIH DDEENLEVAK IKLRVVHPSS  180
GIDSMLDVLK CLKNTGTKTK AIQSTFSSQE FSAVLEIEAK GAAEVEKAVH ETLFEAEKKF  240
GRPVLFD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
188100RNRKHVINERMRR
298105MRREKQKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027165815.11e-174transcription factor bHLH92 isoform X1
TrEMBLA0A068TV080.0A0A068TV08_COFCA; Uncharacterized protein
STRINGXP_009614938.13e-70(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124631821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.13e-35bHLH family protein