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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cc03_g04280 |
Common Name | GSCOC_T00026138001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family |
HSF |
Protein Properties |
Length: 363aa MW: 41510.3 Da PI: 4.5861 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc03_g04280 | genome | CGSC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 114.1 | 9.1e-36 | 44 | 135 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98
Fl+k+y++++d+++++++ ws+ +nsf+v+d+++fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ e+ weF+++ F kg+++ll++++
Cc03_g04280 44 FLTKTYDLVDDPSTDHIVCWSKGNNSFIVWDPQTFAMNLLPRYFKHNNFSSFVRQLNTYGFRKVDAEK---------WEFANEGFLKGQRHLLRNVR 131
9****************************************************************998.........******************** PP
XXXX CS
HSF_DNA-bind 99 rkks 102
r+k+
Cc03_g04280 132 RRKT 135
*986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 363 aa
Download sequence Send
to blast |
MNPLGSSVKE EFPAGSSSWY SDETFSSATP QPMEGLRESG PPPFLTKTYD LVDDPSTDHI 60 VCWSKGNNSF IVWDPQTFAM NLLPRYFKHN NFSSFVRQLN TYGFRKVDAE KWEFANEGFL 120 KGQRHLLRNV RRRKTPPHLQ SSNPNLESCL EVGRFGLDVE VDRLRRDKQV LMLELVRLRQ 180 QQQNTKAYLK TMEQRLRGTE NEQQQMMTFL ARAIQNPRIL EQLVQQKDKR KELEEAIGNK 240 RRRPIDKGPS FSVGVGEFGQ EGEEVNDYVK LECQDYGHDL TGLTDFELNT LAINMQEPTP 300 PPMNLEEEYV GKDDDSFDDG FWDGLIHEGI ENDIGLRGGE GEDLEDLDLL TDQLGFLGSN 360 PP*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
2ldu_A | 1e-27 | 39 | 135 | 15 | 122 | Heat shock factor protein 1 |
5d5u_B | 1e-27 | 39 | 135 | 24 | 131 | Heat shock factor protein 1 |
5d5v_B | 1e-27 | 39 | 135 | 24 | 131 | Heat shock factor protein 1 |
5d5v_D | 1e-27 | 39 | 135 | 24 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 228 | 242 | KRKELEEAIGNKRRR |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |