PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g02580
Common NameGSCOC_T00025912001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family SBP
Protein Properties Length: 782aa    MW: 86636.5 Da    PI: 7.4204
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g02580genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP118.14.5e-37120196177
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                  +Cqv+gC ad+se+k yh+rh+vC ++++a +v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k 
  Cc03_g02580 120 RCQVPGCGADISELKGYHKRHRVCLQCANAGAVVLDGQSKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKP 196
                  6***********************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.3E-28116182IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.556118195IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.46E-34119198IPR004333Transcription factor, SBP-box
PfamPF031108.1E-28121195IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MISAFLEDPT NSSLFDWSDF LDFNIDVEPF ASAPFAADQQ QQEGPVSPSD SDQVSPPAED  60
PGRVRKRDPR LVCTNFLAGR VPCACPELDE KLELEEVTAL GGPGKKRPRT VRVPAGSNAR  120
CQVPGCGADI SELKGYHKRH RVCLQCANAG AVVLDGQSKR YCQQCGKFHI LSDFDEGKRS  180
CRRKLERHNN RRRRKPNDPK GTVETEHQQT TVAEDVSGDD DAGKDGICLS SENAEKETLL  240
ESEGQQSTLC SAHDSQNIQN NSIVTSGSYG DTQIYGEKEN PKYSRSPSFC DNKNAFSSVC  300
PTGRISFKLY DWNPAEFPRR LRHQIFQWLA SMPVELEGYI RPGCTILTVF IAMPKFMWVK  360
LSEKPAECLH NLVLSPGSML SGRDTFYIYL NNMIFRVIKG GSSLFKVKVN EQAPKLHHVH  420
PTCFEAGKPM EFVACGSNLL PSKLRFLVSF TGKYLAHDLC VSSSCGKTEG DAGTLNHHSF  480
KISVPQTEPG IFGPAFVEVE NEFGLSNFIP VLIGDKEICA EMNIMQQRFA AKPCIKGLQL  540
SATSSCGVSD LRQTEFSEFI MDVAWSLKKP VMKSSTQFLT SVQIKRFTNL LNFLIENEST  600
AILDRVVYYT RVLIDNNFVA TNITDADMEH LWMNLDKARD ILHQKLRRNE HQLNNSRKFL  660
LGERSFNRSS LDHMSSVATS NSQGEEVTSK AKLAARVDIS SHEGGTTVPL LTGEVVMRVN  720
VSERPGKSCS PLLIKTGFSS RPLIFAVTAA TVCIGLCAVL FHPETVGEVA TTIRKCLQQN  780
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A2e-42116203188squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181193RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027164649.10.0squamosa promoter-binding-like protein 7
TrEMBLA0A068TSI20.0A0A068TSI2_COFCA; Uncharacterized protein
STRINGVIT_05s0020g02160.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54072433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.10.0squamosa promoter binding protein-like 7