PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g00950
Common NameGSCOC_T00025694001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 598aa    MW: 66655.7 Da    PI: 6.0565
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g00950genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2807.2e-862245941373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalkl.fsevsPilkfsh 95 
                  lv+ Ll++Ae v ++++++a +lL++ ++ +  +g+p+qRl++yf  AL++r+ r++ +  ++ + +  +++      +++++ l f+++ P+  +s+
  Cc03_g00950 224 LVQHLLAAAEKVGEKQFHRAGKLLKECKKPSFDKGNPVQRLVHYFSGALHERIDRETGRSRSQGTGRMLTKYVenALATINSTVLaFQKAVPFSYVSQ 321
                  6899***************************************************5555555444444443332244444444447************ PP

         GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                  ++  qaI e ve +++vHiiD+++  G+Q+  L+qaLa+ +e p  +l+iT+v+    + +e++e+tg+rL +fAe++ +p++f++++ +++ dl+ +
  Cc03_g00950 322 FAGIQAIIEQVEDARKVHIIDLQVRLGTQYTMLIQALAAGSECPVeHLKITAVAT---SCREAIEATGRRLVSFAESFSLPLSFSIVMLDDILDLHGN 416
                  **************************************99965545********9...69************************************** PP

         GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                   ++++ +Ea+aV + +  + +  ++  les    ++ ++++l+P+v+v++e ea+hn++ F++rf+eal yy a+fd++e  l  ++ +r+++E  ++
  Cc03_g00950 417 VFELDDEEAVAVYSEYFFMMMIGSPDRLES----LMGVIRNLNPRVFVITEVEANHNAPVFVNRFTEALFYYGAFFDAFEDCLKDDEANRMVLESIYF 510
                  ****************99999988888888....**************************************************************** PP

         GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                  ++ i+n+v++eg+er+ rh + + Wre + ++G+ +v+ls + + qa+lll++++ ++  +++ + ++l+ gWk+ p  s+SaW
  Cc03_g00950 511 SKGIKNIVSAEGEERTIRHVKINVWREFFARFGMVEVELSMSSMYQANLLLKNFAcGNSCTLDVDGKALIVGWKGTPTNSLSAW 594
                  *******************************************************9999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.868198574IPR005202Transcription factor GRAS
PfamPF035142.5E-83224594IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MSYKMFSLEK LDLGGFPDNF APSKGTKVAG EGNAKKRTRT RSLGGENGGE SEEITSLYSG  60
LSFDNQKDNT AEERISSSKY QHELQLQQFV DFGGLDNLYF DVVSPPFQSC SEEIRKLFNT  120
KPGNPEFVES CKEKPHATSL EILKNYGSRL RRLNGEKINI SHFDVASTGI SKKKLSTLAI  180
LLLAGENFIH TSNSTAKSEL STLSHPYASS FLGLSEEDTK DVQLVQHLLA AAEKVGEKQF  240
HRAGKLLKEC KKPSFDKGNP VQRLVHYFSG ALHERIDRET GRSRSQGTGR MLTKYVENAL  300
ATINSTVLAF QKAVPFSYVS QFAGIQAIIE QVEDARKVHI IDLQVRLGTQ YTMLIQALAA  360
GSECPVEHLK ITAVATSCRE AIEATGRRLV SFAESFSLPL SFSIVMLDDI LDLHGNVFEL  420
DDEEAVAVYS EYFFMMMIGS PDRLESLMGV IRNLNPRVFV ITEVEANHNA PVFVNRFTEA  480
LFYYGAFFDA FEDCLKDDEA NRMVLESIYF SKGIKNIVSA EGEERTIRHV KINVWREFFA  540
RFGMVEVELS MSSMYQANLL LKNFACGNSC TLDVDGKALI VGWKGTPTNS LSAWIFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-3723259426377Protein SCARECROW
5b3h_D6e-3723259426377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027118133.10.0DELLA protein RGL1-like
TrEMBLA0A068TRC90.0A0A068TRC9_COFCA; Uncharacterized protein
STRINGXP_008223345.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.16e-51GRAS family protein