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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc03_g00940 | ||||||||
Common Name | GSCOC_T00025693001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 596aa MW: 67094.7 Da PI: 6.5691 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 288.4 | 2e-88 | 222 | 593 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kalppsetseknsseelaalkl.......fsevsPi 90 lv+ Ll+ Ae v ++++e+a +lL + +l+s++g++++Rl+ yf AL++r+ r++ ++ k l ++ + l ++ ++ P+ Cc03_g00940 222 LVQYLLASAELVGKKQFERAGKLLLECDKLSSNQGNAIERLVYYFSGALHERIDRETGTVTpKGLGKMQS-----LDMLDTMSGitpdiiaMQKSVPF 314 6899***************************************************443333033322222.....22222221112233469****** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187 ++s+++ q Il+ v+ ++++Hi+D++i G+Q+ L+qaLa+R+ ++ l++T++g +sk ++eetg+rLa+fA++ +++f+ n++++ ++ Cc03_g00940 315 SQVSQFAGAQGILDHVADATKIHIVDLEIRTGMQYTILMQALATRSqNPLEYLKVTAIGT---KSKAKIEETGRRLASFARAWNLKFSLNIVMVADIM 409 **********************************************455569********...689******************************** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 dl+ + +++ +Ea+aV + + l + +++ les ++++vk ++P+v++v+e e +hns+ F++rf+eal yy a++dsle l ++s++r++v Cc03_g00940 410 DLNENLFEIYADEAVAVWVEYYLTFMIRRQDILES----LMNVVKAINPRVMIVTEVEGNHNSPVFVTRFIEALFYYGAFYDSLEDCLKHDSKNRMFV 503 *********************99999977766666....*********************************************************** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 E ++++++++n+va+eg+er+ rh ++ W++ + ++G+ +v+ls + + qa+lll++++ + ++ + + l++gWk+ p+ s+SaW+ Cc03_g00940 504 ESVYFSQALRNIVATEGEERTIRHVAVNVWKAFFARFGMVQVELSMSSMYQANLLLKNFDcGSSCTLAMDGKGLIIGWKGTPIHSLSAWK 593 ************************************************************9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.967 | 196 | 572 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.9E-86 | 222 | 593 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 596 aa Download sequence Send to blast |
MEMFHFDHFD FLGVSGKYGS TKGFQFEDHA KEEKRNHLIT NNDHDREASR GIGSFYPGAP 60 GSNQVHCNTA DGVIFSKLHQ EQQLKQLSGF ACVNDLYFDM EIPPFQSCEE AIKKLVDDVA 120 FEGSEPNDAK KERPYAGSLQ ILKNYRKRFR KLNVEKTDFP SYLGCTFITS QKLSTDAILK 180 LAAQNFIRSS SEGTSSEFFV LNHPYASSFV GLGEEDIKGV QLVQYLLASA ELVGKKQFER 240 AGKLLLECDK LSSNQGNAIE RLVYYFSGAL HERIDRETGT VTPKGLGKMQ SLDMLDTMSG 300 ITPDIIAMQK SVPFSQVSQF AGAQGILDHV ADATKIHIVD LEIRTGMQYT ILMQALATRS 360 QNPLEYLKVT AIGTKSKAKI EETGRRLASF ARAWNLKFSL NIVMVADIMD LNENLFEIYA 420 DEAVAVWVEY YLTFMIRRQD ILESLMNVVK AINPRVMIVT EVEGNHNSPV FVTRFIEALF 480 YYGAFYDSLE DCLKHDSKNR MFVESVYFSQ ALRNIVATEG EERTIRHVAV NVWKAFFARF 540 GMVQVELSMS SMYQANLLLK NFDCGSSCTL AMDGKGLIIG WKGTPIHSLS AWKFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-40 | 252 | 593 | 33 | 375 | GRAS family transcription factor containing protein, expressed |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027118132.1 | 0.0 | DELLA protein RGL2-like | ||||
TrEMBL | A0A068TR45 | 0.0 | A0A068TR45_COFCA; Uncharacterized protein | ||||
STRING | EMJ25971 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3427 | 21 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 1e-58 | RGA-like 2 |