PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g38230
Common NameGSCOC_T00027890001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 615aa    MW: 69582.3 Da    PI: 8.1426
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g38230genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.1e-08517565247
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE++++ + vk  +       W+ I + ++ +R++++++s+++++
      Cc02_g38230 517 LSWTKEEEKKFHNIVKSNPLSlgkcFWHEIVKAFP-NRSRESLVSYYFNV 565
                      58**************877667777**********.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.150.603.0E-1315125IPR001606ARID DNA-binding domain
SMARTSM010141.0E-828120No hitNo description
PROSITE profilePS5101117.61331124IPR001606ARID DNA-binding domain
SMARTSM005011.3E-1132125IPR001606ARID DNA-binding domain
SuperFamilySSF467743.4E-1434123IPR001606ARID DNA-binding domain
PfamPF013882.6E-1158118IPR001606ARID DNA-binding domain
SMARTSM007170.002515568IPR001005SANT/Myb domain
PfamPF002495.9E-6518565IPR001005SANT/Myb domain
CDDcd001676.42E-7518566No hitNo description
PROSITE profilePS500906.214518566IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.0E-4518565IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016575Biological Processhistone deacetylation
GO:0048235Biological Processpollen sperm cell differentiation
GO:0000118Cellular Componenthistone deacetylase complex
GO:0048555Cellular Componentgenerative cell nucleus
GO:0048556Cellular Componentmicrosporocyte nucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MAGWLKRVDG SGLESFKFNR KVEEAKQPSC GNLKSSFDEF LPVFLKKSFG ILCFRPLPPM  60
LGNGQSVDLF KLYLRVRDRG GLEKVSKTGQ WGSVALECGV DSSSASALKL VYVKYLDTLD  120
KSLQRVVRGE SSERGANESG LDILKELVMD LESDLKGFLS GIVDNKNKDG EVTSVELKKK  180
EFDFESGGKF ARLDEVGGLV KLNGDAEDGD KTSAADDGGE CGFVSFDVEE KPDGVDSLFE  240
VGIREERRIE DGDTQLDSSS RKEDLVRRKR RRESYLSMLK WINRVARDPC DPAIGFLPDK  300
SKWKYYANDL VWKQALLVRE AMMSKRNSES SDQHSILQKK QKMHPVLYDD QIGSERQRFS  360
QRLLSAKDPS KKSRARNFSE SCSSGTQSDE EFNDTQSDSS SDSEADFVGS RRHRKKRIPL  420
GPQFQADVPE WTGKACESDS KWLGTQYWPL VRVEQNRNLI ERERIGKGRL DSCGCQIPGS  480
LECVRFHVSE KRTRVKLELG PAFYRWKFDN MGEDVALSWT KEEEKKFHNI VKSNPLSLGK  540
CFWHEIVKAF PNRSRESLVS YYFNVFLLHR RGYQNRVTPT DINSDDDESE SSYGSAKPPG  600
SIFCSPKKPH LNIG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267271RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027158877.10.0AT-rich interactive domain-containing protein 1
RefseqXP_027158878.10.0AT-rich interactive domain-containing protein 1
TrEMBLA0A068UK100.0A0A068UK10_COFCA; Uncharacterized protein
STRINGSolyc05g049960.2.11e-171(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA177233