PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g37950
Common NameGSCOC_T00027926001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family BES1
Protein Properties Length: 697aa    MW: 78279 Da    PI: 5.0702
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g37950genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221402.2e-43722101131
       DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl.eeaeaagssas...aspe 91 
                  ggs+r ++++E+E++k+RER+RRai+aki+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +g +p   + +++++s+s    +++
  Cc02_g37950  72 GGSRRCRPQEEKERTKLRERQRRAITAKILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGARPVgGTCSTVVTSSSshiPTQQ 169
                  6899*****************************************************************97778888889555544444442333444 PP

       DUF822  92 sslq.sslkssalaspvesysaspksssfpspssldsisla 131
                  ++   ++  ss  +  ve  ++++ks+ +p +s +d+ s+ 
  Cc02_g37950 170 TPPIsLRGISSPYQNTVEYNACQMKSVFVPTSSPYDESSSI 210
                  44333777899999999999***************998654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056878.8E-3973204IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514454.04E-179253692IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.808.9E-198256690IPR013781Glycoside hydrolase, catalytic domain
PfamPF013733.0E-106262680IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.4E-68293307IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.4E-68314332IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.4E-68336357IPR001554Glycoside hydrolase, family 14
PRINTSPR008421.7E-6419428IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007502.4E-68429451IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.4E-68502521IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.4E-68536552IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.4E-68553564IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.4E-68571594IPR001554Glycoside hydrolase, family 14
PRINTSPR008421.7E-6574584IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007502.4E-68611633IPR001554Glycoside hydrolase, family 14
PRINTSPR008421.7E-6662676IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008421.7E-6677691IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MAAEMQRFVT SEDDDEEMGM DVKEEDDEDD DDGEKNIESP AMLGVDGGLA ASSSNNRFVH  60
HQQYQEQPTP QGGSRRCRPQ EEKERTKLRE RQRRAITAKI LAGLRRHGNY NLRVRADIND  120
VIAALAREAG WVVLPDGTTF PSRSQGARPV GGTCSTVVTS SSSHIPTQQT PPISLRGISS  180
PYQNTVEYNA CQMKSVFVPT SSPYDESSSI RTNSSPLLGD GGDVHNDPLL GGSIDSLDNK  240
QVDISTKLQE RDFAGTPYVP VYVMLPLGII NMKCELVDSD GIIKQLRVLK SINVDGVMVD  300
CWWGIVEAHV PQEYNWNGYK RLFQIVREIK LKLQVVMSFH ECGGNIGDDV CIPLPNWVAE  360
IGRSNPDIYF TDRAGRRNPE CLSWGIDKER VLRGRTAVEV YFDYMRSFRA EFDEFFEDGM  420
ISMIEVGLGP CGELRYPSYP VKHGWRYPGV GEFQCYDQYM LNSLRKAAEN RGHSFWARGP  480
DNAGSYNSCP HETGFFCDGG DYDGYYGRFF LNWYSQVLIE HGDRVLSLAN LVFEGTCIAV  540
KLSGAPWWYK TASHATELTS GFYNSCNRDG YAAIVAMLKK HGVILNFTCA GMSMLNQNVD  600
FSEALADPEG LTWQVLNTAW DVCVPVASEN ALPCHDREGY NYLSEKAKPT NDPDGRHLFS  660
FTYLRLRPLL MERHNFLEFE RFVKRMHGEA VLDILA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1btc_A1e-1512586897440BETA-AMYLASE
1bya_A1e-15125868911444BETA-AMYLASE
1byb_A1e-15125868911444BETA-AMYLASE
1byc_A1e-15125868911444BETA-AMYLASE
1byd_A1e-15125868911444BETA-AMYLASE
1uko_A1e-15125868911444Beta-amylase
1uko_B1e-15125868911444Beta-amylase
1uko_C1e-15125868911444Beta-amylase
1uko_D1e-15125868911444Beta-amylase
1ukp_A1e-15125868911444Beta-amylase
1ukp_B1e-15125868911444Beta-amylase
1ukp_C1e-15125868911444Beta-amylase
1ukp_D1e-15125868911444Beta-amylase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027162038.10.0beta-amylase 7-like isoform X1
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A068UKR60.0A0A068UKR6_COFCA; Beta-amylase
STRINGVIT_15s0046g02640.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]