![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc02_g36980 | ||||||||
Common Name | GSCOC_T00028050001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 250aa MW: 28229.4 Da PI: 9.3497 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100.1 | 8.4e-32 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ Cc02_g36980 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58 79**********************************************95 PP | |||||||
2 | K-box | 101 | 1.7e-33 | 78 | 169 | 7 | 98 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++e++++s++qe++kLk+++e+Lqr qRhllGedL++L++keLq+Le+qLe +l + R++K++l++eq+eel++ke++l + nk+L+ k+ Cc02_g36980 78 ENAAERETQSWYQEVSKLKAKYESLQRAQRHLLGEDLGPLNVKELQNLEKQLEGALLQARQRKTQLMIEQMEELRRKERQLGDLNKQLKIKV 169 3478999*********************************************************************************9886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.5E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.683 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.79E-45 | 2 | 73 | No hit | No description |
SuperFamily | SSF55455 | 4.97E-34 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.7E-29 | 81 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.561 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009553 | Biological Process | embryo sac development | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010094 | Biological Process | specification of carpel identity | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048455 | Biological Process | stamen formation | ||||
GO:0048459 | Biological Process | floral whorl structural organization | ||||
GO:0048509 | Biological Process | regulation of meristem development | ||||
GO:0048833 | Biological Process | specification of floral organ number | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0080112 | Biological Process | seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSS 60 GITKTLERYQ RCSLSPQENA AERETQSWYQ EVSKLKAKYE SLQRAQRHLL GEDLGPLNVK 120 ELQNLEKQLE GALLQARQRK TQLMIEQMEE LRRKERQLGD LNKQLKIKVS LEMSSLEAAE 180 GQGLRALPCL WSSSVPSGSS MFPMHPSAMD CDPEPVLQIG YHHQYAPAEG PSAPRSMAIE 240 SNIIQGWAL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-22 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 4e-22 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 4e-22 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 4e-22 | 1 | 69 | 1 | 69 | MEF2C |
6byy_A | 4e-22 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6byy_B | 4e-22 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6byy_C | 4e-22 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6byy_D | 4e-22 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6bz1_A | 4e-22 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6bz1_B | 4e-22 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6bz1_C | 4e-22 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6bz1_D | 4e-22 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00315 | DAP | Transfer from AT2G45650 | Download |
![]() |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ483245 | 0.0 | KJ483245.1 Coffea arabica AGL6 (AGL6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027109717.1 | 1e-164 | MADS-box transcription factor 6-like | ||||
Refseq | XP_027115031.1 | 1e-164 | MADS-box transcription factor 6-like | ||||
Refseq | XP_027163327.1 | 1e-164 | MADS-box transcription factor 6 | ||||
Swissprot | Q8LLR1 | 1e-138 | MADS3_VITVI; Agamous-like MADS-box protein MADS3 | ||||
TrEMBL | A0A068UKB4 | 0.0 | A0A068UKB4_COFCA; Uncharacterized protein | ||||
STRING | XP_009796076.1 | 1e-148 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45650.1 | 1e-106 | AGAMOUS-like 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|