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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g36630 | ||||||||
Common Name | GSCOC_T00003899001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 202aa MW: 21614.8 Da PI: 8.1595 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125 | 3.6e-39 | 11 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC k+C++apyf eq +++fa+vhk+FGasn +k+l ++p ++r da+ +l+yeA ar+rdPvyG+vg++++lqqq+ +l+aela + Cc02_g36630 11 PCGACKFLRRKCLKGCIFAPYFDPEQgTAHFAAVHKVFGASNASKMLLRVPAHKRLDAVVTLCYEALARIRDPVYGCVGHLFTLQQQVVNLQAELACA 108 7*********************666659********************************************************************99 PP DUF260 98 kee 100 +++ Cc02_g36630 109 QAR 111 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.017 | 10 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-38 | 11 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MSGTGHNGSG PCGACKFLRR KCLKGCIFAP YFDPEQGTAH FAAVHKVFGA SNASKMLLRV 60 PAHKRLDAVV TLCYEALARI RDPVYGCVGH LFTLQQQVVN LQAELACAQA RLSTLQRLPS 120 MLPPPAQGPS PGNFQSCTAN ASSIHNLEPP LPSEQTSMDM EGFSNPVNDR DLGGGDDLHA 180 FAQGFVSRYL PEVKFKPCTS P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-38 | 4 | 123 | 4 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-38 | 4 | 123 | 4 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00313 | DAP | Transfer from AT2G45410 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027107812.1 | 1e-148 | LOB domain-containing protein 19-like isoform X1 | ||||
Swissprot | O22132 | 2e-69 | LBD19_ARATH; LOB domain-containing protein 19 | ||||
TrEMBL | A0A068VAE7 | 1e-147 | A0A068VAE7_COFCA; Uncharacterized protein | ||||
STRING | cassava4.1_030486m | 2e-85 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 8e-72 | LOB domain-containing protein 19 |