PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g35910
Common NameGSCOC_T00042773001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 718aa    MW: 76565.8 Da    PI: 6.5086
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g35910genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.5e-16448494455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Cc02_g35910 448 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 494
                  6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.48E-17440498No hitNo description
SuperFamilySSF474591.57E-20441505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-20441502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.228444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-13448494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17450499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MPLSEFLRMA RGKLESAQPK TASPADLSPA TENDLVELLW ENGQILMQGQ SNRVKKSPNL  60
NDFPSQEPGI RDRFTGNVST SKVGKFVEIG STLNDAMPSV RSGETYLNQE DEMGPWLNYP  120
VDDGFRSDFC SEILPEISGV TGNEPSTLNS FGSVVKGSCN QVPQHSYTVP VHNGLDIEAR  180
NASKVSSSRT GLLSPYSSQQ CQLSVAPAGS GVSSVVMNTT SNNPVTFFGD TVQGQASPGG  240
LVSMKMQNQK VASNFLNFTH FSRPAALVRA NLEKTDGIAA SCSSGIEKVS AVSSTSPVKS  300
THKPSSNSQK DICVHSQPKL VSTKVDSRPS FDKPPEESCR AQRPDNLHWD DSIKNDKSSS  360
PIISSSITKE VKDCENPVEP VVAASSVCSA NSGEGASNDQ MHTLKRKHCD NEESESRSED  420
IEEESVGIKK VAHARGVSGS KRSRAAEVHN LSERRRRDRI NEKMRALQEL IPNCNKADKA  480
SMLDEAIEYL KTLQLQVQVM SMGAGLCMPP MMFPTGLQHM HPAHVPHFPP MAGGMGLGMG  540
YGMGMLDLNS GSPRFPIFPV PPMQGAHFPS PTISGSSGFQ GLAGSNLQVF GHPGQGVPMS  600
IPRAPLVPLV GQAPISSAVG VDTSRMGIHV EASNASPTLN SVVEVQNKNS QLNHKTDTGS  660
SISQTSSQAT SKEFDQSAMT SKDDQAPDVC AAASVNMAST TDLVCDKEKG SNGMCKE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1452457ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108073.10.0transcription factor PIF3-like isoform X2
TrEMBLA0A068V3H40.0A0A068V3H4_COFCA; Uncharacterized protein
STRINGVIT_14s0060g00260.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49652437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-39phytochrome interacting factor 3