|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cc02_g35890 |
Common Name | GSCOC_T00042778001 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
Family |
M-type_MADS |
Protein Properties |
Length: 260aa MW: 29555.1 Da PI: 9.752 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc02_g35890 | genome | CGSC | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 54.1 | 2.1e-17 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
+i n+s r+ tf kR++g++KK ELS+LC+++++ ii+s+
Cc02_g35890 10 FITNDSARKATFKKRKKGLMKKVGELSTLCGIDACAIIYSP 50
89**************************************8 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 260 aa
Download sequence Send
to blast |
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVGELSTLCG IDACAIIYSP YESQPEVWPN 60 TMGVQRVISQ FKRMPEMEQS KKMVNQESFI RQRIAKANEQ LKKQHKDNRE KEMTEVMYQC 120 LTGKGMQNMS MPDLNDLGWL IDQNLKEIYK RIDSLKKMAP HHQQISQPQA ATAPPPPAQP 180 PAHPPVTLAA NDMLAGGVQV QEQKPSVDLT MDAAVHRPQW FTDWMNNPAG ENMGFGHGDE 240 MMMQFHDNHN PMWSSAFFP*
|
Nucleic Localization
Signal ? help
Back to Top |
|
No. |
Start |
End |
Sequence |
1 | 2 | 24 | RKKVKLAFITNDSARKATFKKRK |
2 | 21 | 25 | KKRKK |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |