PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g35090
Common NameGSCOC_T00011828001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 302aa    MW: 33220.6 Da    PI: 4.4783
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g35090genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08180224655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++ r+RR++i ++ +eL +l+P       +K++ ae+ + A +YIk Lq
  Cc02_g35090 180 SIAARQRRRKITEKTQELGKLIPGG-----QKMNTAEMFQAASKYIKFLQ 224
                  6788*******************86.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.925174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.22E-10177227No hitNo description
SuperFamilySSF474591.96E-11177233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-11178231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-10180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-6180224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MALSCYSNWG ELEQHHDLEM TLQFAQPPAA ELSPELLGFN HMNFAFSDPY LDPILESQDL  60
VYSDNYTSLL PHFSSPSDEN PNSLYSLVPE VFPELEYQPC HSAKRQKIFE GCYNNSEVLP  120
SSFGSRFIPN PPLIQELSPP EILSPFSGSL ASEPPVFCSG GTGEMTVKKA SNGGTLSSQS  180
IAARQRRRKI TEKTQELGKL IPGGQKMNTA EMFQAASKYI KFLQAQVGIL ETLASVQENG  240
KSLQNEELNP LLGSSLIQEK LYSMEMCLAP QKFVQSLAED NGIELNTRAL NDCKELIGIG  300
C*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027103325.10.0transcription factor bHLH52-like
TrEMBLA0A068VCG60.0A0A068VCG6_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-27bHLH family protein