PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g33760
Common NameGSCOC_T00015426001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 332aa    MW: 37254.8 Da    PI: 5.4785
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g33760genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.4e-14119170155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r+ah ++Er+RR+++N+ ++ Lr l+P+    + +K + a+i+  A++Y+k+L+
  Cc02_g33760 119 QRMAHIAVERNRRKQMNEYLSLLRGLMPEG---YVQKGDQASIVGGAINYVKELE 170
                  79***************************9...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.67E-13117174No hitNo description
PROSITE profilePS5088815.542118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-17118184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-14119181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-11119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-11124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MALETVVYQQ DMLGYNIKDL CNYFGGGNIW GCDFDFAETF ESSSFDFRQE NTDEKSPLSL  60
TVPPSENWAP NAASELESCV HKIPDDQNLQ LDSSSTMSSS RPRRRRSRPK KNQEEIENQR  120
MAHIAVERNR RKQMNEYLSL LRGLMPEGYV QKGDQASIVG GAINYVKELE QQLQFLDGQS  180
HTNRSYDSGP SSLISSSSSP FSEFFTYPQY SATMTSSENA FTITNLMSDP SSTRGNRLAA  240
ADIEVTMVEN HANLKVRSRK RPKLLMKMVS GLQSLRLTIL HLNVTTADQI VLYSISLKVE  300
DDCRLTTVDE IAAAVNKMLR RIQEEAAVFT G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100107RPRRRRSR
2119130RMAHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027102488.10.0transcription factor bHLH94-like
TrEMBLA0A068V6L60.0A0A068V6L6_COFCA; Uncharacterized protein
STRINGVIT_14s0128g00110.t011e-109(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132271518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-72bHLH family protein