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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cc02_g32250 |
| Common Name | GSCOC_T00012959001 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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| Family |
LBD |
| Protein Properties |
Length: 250aa MW: 26934 Da PI: 5.0752 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc02_g32250 | genome | CGSC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 126.8 | 1.1e-39 | 48 | 149 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97
+C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++pe++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+aela++
Cc02_g32250 48 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPENRRNDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELAVV 145
7***********************9989*********************************************************************9 PP
DUF260 98 keel 101
+++l
Cc02_g32250 146 QTQL 149
9885 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
| GO:1900150 | Biological Process | regulation of defense response to fungus |
| Sequence ? help Back to Top |
| Protein Sequence Length: 250 aa
Download sequence Send
to blast |
MNDQSKSDQG MSDSGRRKGS SEKRASSIIE ATEGALLNAG VSPPPSAPCG ACKFLRRKCI 60
SGCIFAPHFG SDQGAARFAA VHKVFGASNV SKLLLHIPEN RRNDAVVTIS YEAQARLSDP 120
VYGCVSTILA LQQQVASLQA ELAVVQTQLM NSRLAMANAL RDSQVIQQQQ IVALQPAYSN 180
TSAASNTLMN INSFNSNFDL VGEAAPSNSF DPVHLSQAPE EVEEEDEEES QNHLDFTSQI 240
FHQDNKTFF*
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