PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g31480

Common Name

GSCOC_T00027550001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

GeBP

Protein Properties

Length: 477aa MW: 52561.9 Da PI: 4.4928

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g31480	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	121.6	3.8e-38	160	258	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 lfqrlw++eDei lLqG++++++++g+ s ++d++afy+++k++++++++k+qlveK+rrLKkK+++ ++k++sgke +f+++hdq +fe+s+kiW Cc02_g31480 160 LFQRLWTDEDEIELLQGFLEYTTSRGVinsSHHHDTTAFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMNKMSSGKEYVFKSPHDQATFEISRKIW 257 79**********************99845556************************************************************** PP DUF573 97 g 97 g Cc02_g31480 258 G 258 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.5E-34	161	258	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MAASQEDRNA YNPEDLDDDE EDEEGIGGLI HNPGNNTNDI NPPENDVVVD DEDDDVDVDV 60 DVDEDDDVDD STSSSNLAAA DHHHHDPSSL LNHHHHHIHL PPPPSLSPGD VTVALPTDQS 120 LRPDAERQRI DEVTVASVSA VASAVVEEKK PVPNDESRRL FQRLWTDEDE IELLQGFLEY 180 TTSRGVINSS HHHDTTAFYD QIKSKLQLDF NKNQLVEKLR RLKKKYRNVM NKMSSGKEYV 240 FKSPHDQATF EISRKIWGGS GVGASVRSGV VMEEGGFDDD DGNPNFSVNF IDQSPNPNFN 300 LNPNGIDQLE KKTPRSRKRP RGVGGVKIEE KPFGYTSVPT LQNSNQQQSV QNVQNMQNVG 360 VVTPTATQIG PVTAAAGSAG SGQATNLIEE TVRSCLSPIF KELLNTVMSL NGPMMGGSRG 420 FGFALSPMPL GLNGDLVADE KWRKQQILEL EVYSKRLELV QDQIKTQLEE LRSMGS*

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MAASQEDRNA YNPEDLDDDE EDEEGIGGLI HNPGNNTNDI NPPENDVVVD DEDDDVDVDV  60
DVDEDDDVDD STSSSNLAAA DHHHHDPSSL LNHHHHHIHL PPPPSLSPGD VTVALPTDQS  120
LRPDAERQRI DEVTVASVSA VASAVVEEKK PVPNDESRRL FQRLWTDEDE IELLQGFLEY  180
TTSRGVINSS HHHDTTAFYD QIKSKLQLDF NKNQLVEKLR RLKKKYRNVM NKMSSGKEYV  240
FKSPHDQATF EISRKIWGGS GVGASVRSGV VMEEGGFDDD DGNPNFSVNF IDQSPNPNFN  300
LNPNGIDQLE KKTPRSRKRP RGVGGVKIEE KPFGYTSVPT LQNSNQQQSV QNVQNMQNVG  360
VVTPTATQIG PVTAAAGSAG SGQATNLIEE TVRSCLSPIF KELLNTVMSL NGPMMGGSRG  420
FGFALSPMPL GLNGDLVADE KWRKQQILEL EVYSKRLELV QDQIKTQLEE LRSMGS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027160496.1	0.0	probable transcription factor At5g28040
TrEMBL	A0A068ULS6	0.0	A0A068ULS6_COFCA; Uncharacterized protein
STRING	XP_009785461.1	1e-123	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4052	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	1e-79	DNA-binding storekeeper protein-related transcriptional regulator