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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g31030 | ||||||||
Common Name | GSCOC_T00023867001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | G2-like | ||||||||
Protein Properties | Length: 157aa MW: 17624.3 Da PI: 9.6845 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 61.5 | 1.6e-19 | 90 | 137 | 3 | 51 |
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 +++Wt++LH++Fv+a++qL G+ P++il lm+v gLt+ +v+SHLQ Cc02_g31030 90 KRVWTSKLHAKFVDAINQL-GEGGCFPSEILALMNVSGLTRMQVASHLQ 137 789****************.9999************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 1.8E-4 | 1 | 58 | No hit | No description |
PROSITE profile | PS51294 | 9.733 | 85 | 144 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-18 | 89 | 137 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.63E-13 | 90 | 140 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-17 | 90 | 141 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.7E-6 | 91 | 137 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MSDFEDPFIA RRALERGAFL YAKKPASLEL VKCLWQYVVR ERKQKGKEKE NVQKKNEKKG 60 KGKAEVIING QEVMNGELGD LPNYTDSLSK RVWTSKLHAK FVDAINQLGE GGCFPSEILA 120 LMNVSGLTRM QVASHLQVSF QSALQRINIL FDCYGN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075878.1 | 3e-87 | two-component response regulator ORR21-like | ||||
TrEMBL | A0A068UGT2 | 1e-112 | A0A068UGT2_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA813 | 23 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31920.1 | 4e-15 | response regulator 10 |