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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cc02_g27930 |
Common Name | GSCOC_T00025150001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family |
MYB |
Protein Properties |
Length: 302aa MW: 32632.4 Da PI: 5.3003 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc02_g27930 | genome | CGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 27.5 | 7.1e-09 | 7 | 36 | 19 | 48 |
TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48
G g+W+ Iar g+ R++k+c++rw +yl
Cc02_g27930 7 NGQGCWSDIARNAGLQRCGKSCRLRWINYL 36
57789***********************97 PP
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2 | Myb_DNA-binding | 52.7 | 9.5e-17 | 42 | 85 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+++++E+el+v+++ lG++ W+ Ia++++ gRt++++k++w++
Cc02_g27930 42 RGAFSPQEEELIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 85
89********************.*********.***********97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MNYMLTNGQG CWSDIARNAG LQRCGKSCRL RWINYLRPDL KRGAFSPQEE ELIVHLHSIL 60 GNRWSQIAAR LPGRTDNEIK NFWNSTIKKR LKNNNAITST SSPNTSDSSD PRAIMLGGLM 120 QPMQAEQDVF SICVDSSSSS PPCMQAILSI TQGNPFNPFP PLHDSAAYLD INGSASAAGA 180 AGLYNLSAAH VGGGGGGSAG SLGDYGLVEP YVMGLESDLS LPALEGRAFD NINAANDQSV 240 LDKRLVHNNH HFNGNENIKV VDDFVGIGNH WNGENLRMGE LDWEGLLANV SSLPYLDFQV 300 E*
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