PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g26760

Common Name

GSCOC_T00024979001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 363aa MW: 40652.9 Da PI: 8.5774

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g26760	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	304	324	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk+F ++ L+ H++++ Cc02_g26760 304 PCSQCGKPF-KPEKLHAHMKSC 324 5******.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	1.1E-38	13	198	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MESNQVGAEV RRIHVIYFLS RKGRIEQPHL IRVHHLSRNG VHLRDVKRWL GELRGKDMPE 60 SFSWSYKRRY KSGYVWQDLL DEDLITPISD NEYVLKGSEI SSTATIEEED SDRIPSSTEE 120 NPDDDHHHHQ ETKMDQPTKI SSPEIEEESP TFGSEQSSTL TDDSMKTKDR DQDQEKNSKK 180 ISAAPSSSAS TSSTAQPSFS KSRSYSNASH LFRNLITCGA VETNDSVMLT ISRRNKPPAN 240 ANLSSLDKQN HLGGSQRIFG TNWNQQRQSS GRKSFDGVRA SQKNNSEFNN QKTNAAHKPI 300 YGPPCSQCGK PFKPEKLHAH MKSCKGMKAW AKYSGPAIST AAADKPAESP QENLVSGYYL 360 TH*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MESNQVGAEV RRIHVIYFLS RKGRIEQPHL IRVHHLSRNG VHLRDVKRWL GELRGKDMPE  60
SFSWSYKRRY KSGYVWQDLL DEDLITPISD NEYVLKGSEI SSTATIEEED SDRIPSSTEE  120
NPDDDHHHHQ ETKMDQPTKI SSPEIEEESP TFGSEQSSTL TDDSMKTKDR DQDQEKNSKK  180
ISAAPSSSAS TSSTAQPSFS KSRSYSNASH LFRNLITCGA VETNDSVMLT ISRRNKPPAN  240
ANLSSLDKQN HLGGSQRIFG TNWNQQRQSS GRKSFDGVRA SQKNNSEFNN QKTNAAHKPI  300
YGPPCSQCGK PFKPEKLHAH MKSCKGMKAW AKYSGPAIST AAADKPAESP QENLVSGYYL  360
TH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027101862.1	0.0	uncharacterized protein LOC113722833
TrEMBL	A0A068UGS6	0.0	A0A068UGS6_COFCA; Uncharacterized protein
STRING	XP_009792716.1	1e-127	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5206	13	15