PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g26300
Common NameGSCOC_T00028625001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 460aa    MW: 51186.4 Da    PI: 6.2546
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g26300genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.8e-13261307354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r+h   Er+RR +iN++++ Lr+l+P++      K++ a+++  A+ YI++L
  Cc02_g26300 261 RKHFTTERQRRVQINDKYQALRSLVPNP-----SKNDRASVVGDAIGYINEL 307
                  67*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.38E-14256321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.621258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-10261312No hitNo description
PfamPF000102.9E-10261307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-12262316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-9264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MLVESACFDP HPIQGGGLVG DGFSQTHVPN CSPSFSMEDH PYHQRNASQP QQQVVSAAAS  60
AAGMEMELQQ QLNIEMEHTN LQDMVHESSR NQILSSCDPS NWEDVNFIYH HQQQLQDHHQ  120
QQHQHMQQVD MQNIQHHNFS MPLPDTPYPP TPDLLNMLPL PRCSPSALLV PNTSISFANS  180
SAQKPSNFLS SLGLLGDLSG TDGVTTPSPV VYDPLLPVNL PPQPPFGCLF QDGDGRSYEN  240
GVFEFTADVK CLGKGRDGKG RKHFTTERQR RVQINDKYQA LRSLVPNPSK NDRASVVGDA  300
IGYINELKRT VAELKILVEK KRCSRDRIKR HKVEDGAEGA AVKTEDDLDQ PYDGSSLRSS  360
WLHRKSKSTE VDVRIIDDEV TVKLVQQKRI NCLLFVSKVL DELQLDLHHV AGGLIGDYYS  420
FLFNSKISEG STVYAHAIAN KLIEVVDKQY AAVQPTSSY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027102874.10.0transcription factor bHLH91-like
SwissprotQ8GX461e-88BH091_ARATH; Transcription factor bHLH91
TrEMBLA0A068UNW90.0A0A068UNW9_COFCA; Uncharacterized protein
STRINGXP_009788149.11e-147(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26962351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.12e-81bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]