PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g26150
Common NameGSCOC_T00028648001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 241aa    MW: 27801.7 Da    PI: 7.9568
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g26150genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.57e-181058249
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyey 49
                 +i n++ r++ f kR+ng++KK +ELS+LC+++++ ii+++ +++  ++
  Cc02_g26150 10 FIRNETERKTCFKKRKNGLIKKVQELSTLCGIDACAIIYGPhDQEPETW 58
                 89**************************************724556666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.27E-23176IPR002100Transcription factor, MADS-box
SMARTSM004327.7E-24160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.086161IPR002100Transcription factor, MADS-box
CDDcd002665.20E-26284No hitNo description
PRINTSPR004041.6E-8323IPR002100Transcription factor, MADS-box
PfamPF003194.4E-181058IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MTRKKIKLAF IRNETERKTC FKKRKNGLIK KVQELSTLCG IDACAIIYGP HDQEPETWPP  60
SPPAVLDLLE RYKSLPERFR RLENQQSYTR SRVDKVHEQI RRKHNGIREN EVTNIMYRCL  120
RGEEVQNLRW ADLNELEWMV SRNLREVSRR ISVLKETVPQ PSAPKAPLET GGYGGNDEGM  180
VAPELPAHMV APEMDRDELQ IYAVDMDMLN VQPWLSDFVW NDSFFEPINN NGAGPSNRAP  240
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKIKLAFIRNETERKTCFKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027101900.11e-135uncharacterized protein LOC113722872
TrEMBLA0A068UNY21e-179A0A068UNY2_COFCA; Uncharacterized protein
STRINGPOPTR_0005s00420.13e-51(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-39AGAMOUS-like 80