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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cc02_g24840 |
Common Name | GSCOC_T00028834001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family |
MYB |
Protein Properties |
Length: 326aa MW: 36881.8 Da PI: 6.2683 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc02_g24840 | genome | CGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 43.5 | 7.3e-14 | 18 | 63 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g+W +eEde l++ vk++G+++W++I ++ + Rt+k+c++rw +
Cc02_g24840 18 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 63
79*************************8887799**********87 PP
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2 | Myb_DNA-binding | 46.6 | 7.6e-15 | 74 | 113 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
++++eE+ + +d+ +q+G++ W++Ia +++ gRt++++k++w
Cc02_g24840 74 KFSAEEERIVIDLQAQFGNK-WAKIATYLP-GRTDNDVKNFW 113
79******************.*********.*********** PP
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Sequence ? help Back to Top |
Protein Sequence Length: 326 aa
Download sequence Send
to blast |
MAGRRERLTC DEMGEIKKGP WKAEEDEVLI NHVKKYGPRD WSSIRSKGLL QRTGKSCRLR 60 WVNKLRPNLK NGVKFSAEEE RIVIDLQAQF GNKWAKIATY LPGRTDNDVK NFWSSRQKRL 120 ARILQTPASS SSSSSNRSQR NKHVPAIHDV PPFEASKFSS SSEEDSLPKS QSCLSSYTVK 180 SLTVEMEMVP LPELMHPNTL NYEQSFLPPE FDLIEKKPCI ETLSQLPFPQ IPNFQSEFAL 240 SLEHNEVVTR LGDPNYLEAF GSSISSELGN VQLPIMPTCF ESERRSTQIA AKCEIGNPVT 300 PDSFVDDFPI DIFDHIEPLP SPLDW*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that acts as a positive regulator of male germline development by promoting both gametic cell specification and cell cycle progression (PubMed:15694308, PubMed:15618418, PubMed:19300502, PubMed:21285328). Binds to canonical MYB sites 5'-AACCGTC-3', 5'-AAACCGC-3' and 5'-AACCGT-3' in promoters to trigger the expression of male germline-specific or enriched genes (e.g. MGH3, GEX2 and GCS1), including those required for fertilization (PubMed:21285328, PubMed:19300502). Required for sperm cell specification leading to pollen maturation by activating a germline-specific regulon (PubMed:21285328, PubMed:15694308, PubMed:15618418, PubMed:19300502). Involved in pollen mitosis entry at G2-M transition via the regulation of CYCB1-1, DAZ1 and DAZ2 expression (PubMed:15618418, PubMed:19300502, PubMed:24876252). {ECO:0000269|PubMed:15618418, ECO:0000269|PubMed:15694308, ECO:0000269|PubMed:19300502, ECO:0000269|PubMed:21285328, ECO:0000269|PubMed:24876252}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Repressed by the microRNA 159 (miR159); the production of miR159 is stimulated by the anaphase promoting complex/cyclosome (APC/C) (PubMed:21441434). Activated by ARID1 in male germline cells via specific histone acetylation regulation (e.g. H3K9Ac) (PubMed:25057814). {ECO:0000269|PubMed:21441434, ECO:0000269|PubMed:25057814}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM464059 | 3e-46 | AM464059.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X130291.4, clone ENTAV 115. |