PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

ERF

Protein Properties

Length: 297aa MW: 31980.8 Da PI: 6.5857

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g24810	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.9	1.2e-18	108	158	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g+ Cc02_g24810 108 TYRGVRKRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 158 69**887.******843...6*********************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	8.0E-32	108	166	IPR001471	AP2/ERF domain
SMART	SM00380	2.8E-35	108	171	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.709	108	165	IPR001471	AP2/ERF domain
Pfam	PF00847	2.7E-13	108	158	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.81E-22	108	166	IPR016177	DNA-binding domain
PRINTS	PR00367	1.6E-10	109	120	IPR001471	AP2/ERF domain
CDD	cd00018	1.05E-30	109	165	No hit	No description
PRINTS	PR00367	1.6E-10	131	147	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MGKQINIGSL ANHDSNLSSS STTTTTTTSS SSSFSTTSNA LNSPSTTSTS SSSSSSNQST 60 KATTSTRTAK AGKAQESSQE LQQVAKINGN ENQPRKKHKN GDDEKHPTYR GVRKRNWGKW 120 VSEIREPRKK SRIWLGTYPT AEMAARAHDV AALAIKGHSA YLNFPRLAHE LPRPATTSPK 180 DIQAAAAKAA AATFPGENGG GAEAEPIQAE LTNCHSSTDF SLHNMQESSN SASTDDDIDD 240 TFFDLPDLSF DVTGATDHLD GFNCFHGSSS WWPQLHLAPA AEPVFRLEEP FLWECY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-17	105	165	11	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00312	DAP	Transfer from AT2G44940	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF743543	0.0	KF743543.1 Coffea arabica ERF transcription factor 04 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027106538.1	1e-169	ethylene-responsive transcription factor ERF038-like
Swissprot	Q8LBQ7	2e-58	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A068UMC9	0.0	A0A068UMC9_COFCA; Uncharacterized protein
STRING	XP_009771308.1	3e-78	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	1e-48	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]