PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g24690
Common NameGSCOC_T00028853001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 490aa    MW: 54209.9 Da    PI: 6.5388
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g24690genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0018399319
                 ETTTTEEESSHHHHHHH CS
      zf-C2H2  3 CpdCgksFsrksnLkrH 19
                 C++Cgk F ++ ++  H
  Cc02_g24690 83 CENCGKEFASWKSFLEH 99
                 **************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.00211335IPR007087Zinc finger, C2H2
PROSITE profilePS501578.5381335IPR007087Zinc finger, C2H2
SMARTSM003556.81335IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
SMARTSM0035524081101IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.56E-8216239No hitNo description
PfamPF139121.4E-9217241IPR007087Zinc finger, C2H2
SMARTSM003550.13217239IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076217244IPR007087Zinc finger, C2H2
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
SuperFamilySSF576677.56E-8292319No hitNo description
PfamPF139124.8E-13296320IPR007087Zinc finger, C2H2
PROSITE profilePS501579.265297319IPR007087Zinc finger, C2H2
SMARTSM003550.6297319IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280299319IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MDCTEDQPPK FKHYCRICKK GFMCGRALGG HMRAHGIGDE GGSLDDDDVA SDWEDKFGGA  60
DRTCRRMYQL RTNPNRLKSC RICENCGKEF ASWKSFLEHG KCSSDDAESL VSSPGSDGEY  120
EGERKGCQWS KRKRSLRTKV GSFSSAYPSS EDEDLLLARC LVDLANARFE VEPEESCASA  180
SKEEERRINP VTAYFNTPLI ASRVPLDKPK GASKGLFECK ACKKVFNSHQ ALGGHRASHK  240
KVKGCFAAKQ DQQDDSSLAD DDVTIHDEFF PSKSPSSLQF EQGPTMAGAS RRKSKVHECT  300
ICHRVFSTGQ ALGGHKRCHW ITSNSQETSS LVKLQFNHDH MDHQILHQGP PLINKSETLD  360
LNIPATQGDH ELSGILRPQN PLSFEVSTDI RLHTWTPNLG AETKCDSQNC HHQNDDDQGN  420
ENDRHNDSNN INKNNINCSN GPIENADDEA DSKVELAKLS DLKDINLSGN SSQWLQVGIG  480
STARVNTNP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027102808.10.0zinc finger protein ZAT4-like
TrEMBLA0A068UMJ40.0A0A068UMJ4_COFCA; Uncharacterized protein
STRINGXP_002511650.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-26C2H2-like zinc finger protein