PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g24640
Common NameGSCOC_T00028859001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 482aa    MW: 51760.6 Da    PI: 8.3695
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g24640genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.2e-16305351455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Cc02_g24640 305 VHNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 351
                  6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.55E-19299364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-17299361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.873301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-13305351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-16306354No hitNo description
SMARTSM003532.1E-17307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MNQCVPSWEL EENHHAPLPP PPPADPKQTL RAHSNSSSLA PDVPTLDYEV AELTWENGQL  60
AMHGLGLPRL PNGKSLAAPP PAKYNSWEKQ PPVGGTLESI VNPAAIIATH RKSAAQSGCR  120
DCGDELVPWF EDHRRAARAP AAASLTLTMD ALVPCSNNTR NDHREPSTHV PKISACPVGC  180
SSTCVGSCSA AAGNAWLRRM SAAAAAAPME WGSKADQSAS GSATCGRDSR QVTLDTCDRE  240
FGTAAYTSTS FGSPENTSSG KQCTKTVDDQ DSPCQSRYEA RNEEQKKKGN GKSSVSTKRS  300
RAAAVHNQSE RKRRDKINQR MKTLQKLVPN SSKTDKASML DEVIEYLKQL QAQVNIMSRM  360
NMSPMMLPLA LQQQLQMSMM ASMGMGMNMG MGMGVMDLNS IGRSNIAGLP PLLHPTAYMP  420
ATSAWDGLAD RLAASTSQAM PDPLAAFLAC QSQPMTMDAY SRMAALYQQF QQPPGPASKN  480
K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309314ERKRRD
2310315RKRRDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027106510.10.0transcription factor UNE10-like
TrEMBLA0A068UMK00.0A0A068UMK0_COFCA; Uncharacterized protein
STRINGXP_002511647.11e-175(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43672132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-87bHLH family protein