 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cc02_g23810 |
| Common Name | GSCOC_T00015084001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
| Family |
NAC |
| Protein Properties |
Length: 369aa MW: 41942 Da PI: 8.3258 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc02_g23810 | genome | CGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 159.1 | 1.8e-49 | 25 | 150 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99
+pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++ +
Cc02_g23810 25 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRS 121
79***************************.89***************8778899******************************************** PP
NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
+glkktLvfy+g+apkg +t+W+m+eyrl
Cc02_g23810 122 IGLKKTLVFYSGKAPKGIRTSWIMNEYRL 150
***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 369 aa
Download sequence Send
to blast |
MAIAATMSQE NNNKDEHEHD HDMVMPGFRF HPTEEELIEF YLRRKVEGKR FNVELITFLD 60
LYRYDPWELP ALAAIGEKEW FFYVPRDRKY RNGDRPNRVT TSGYWKATGA DRMIRTENFR 120
SIGLKKTLVF YSGKAPKGIR TSWIMNEYRL PQHETERLQK AEISLCRVYK RAGVEDHPSL 180
PRSLPTRASS SRGTTSSSAK KSQEATNHAS MERFQAFVGN PQQLDEKLSE TSGSSCTDIG 240
TSLGLSKHNT FMSLAPMTTT LSQLCSTTLA PDCTTIFAGS SFVPTVNTTL DDLHRLVNFQ 300
QASMSQHQQQ YHNNPNHPSQ FSSLQPQVQQ SLALNMLPGP LQAAFTDRLW DWNSINEASK 360
DFNNSPFK*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 9e-56 | 26 | 171 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 9e-56 | 26 | 171 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 9e-56 | 26 | 171 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 9e-56 | 26 | 171 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 9e-56 | 26 | 171 | 19 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 9e-56 | 26 | 171 | 19 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
