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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g23810 | ||||||||
Common Name | GSCOC_T00015084001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | NAC | ||||||||
Protein Properties | Length: 369aa MW: 41942 Da PI: 8.3258 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.1 | 1.8e-49 | 25 | 150 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++ + Cc02_g23810 25 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRS 121 79***************************.89***************8778899******************************************** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkktLvfy+g+apkg +t+W+m+eyrl Cc02_g23810 122 IGLKKTLVFYSGKAPKGIRTSWIMNEYRL 150 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-55 | 24 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.39 | 24 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-24 | 26 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MAIAATMSQE NNNKDEHEHD HDMVMPGFRF HPTEEELIEF YLRRKVEGKR FNVELITFLD 60 LYRYDPWELP ALAAIGEKEW FFYVPRDRKY RNGDRPNRVT TSGYWKATGA DRMIRTENFR 120 SIGLKKTLVF YSGKAPKGIR TSWIMNEYRL PQHETERLQK AEISLCRVYK RAGVEDHPSL 180 PRSLPTRASS SRGTTSSSAK KSQEATNHAS MERFQAFVGN PQQLDEKLSE TSGSSCTDIG 240 TSLGLSKHNT FMSLAPMTTT LSQLCSTTLA PDCTTIFAGS SFVPTVNTTL DDLHRLVNFQ 300 QASMSQHQQQ YHNNPNHPSQ FSSLQPQVQQ SLALNMLPGP LQAAFTDRLW DWNSINEASK 360 DFNNSPFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-56 | 26 | 171 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-56 | 26 | 171 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-56 | 26 | 171 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-56 | 26 | 171 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 9e-56 | 26 | 171 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 9e-56 | 26 | 171 | 19 | 165 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027113345.1 | 0.0 | NAC domain-containing protein 35-like | ||||
Refseq | XP_027160821.1 | 0.0 | NAC domain-containing protein 35 | ||||
Swissprot | Q9ZVP8 | 1e-120 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A068TNX5 | 0.0 | A0A068TNX5_COFCA; Uncharacterized protein | ||||
STRING | cassava4.1_009166m | 1e-174 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3888 | 24 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 1e-112 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
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