 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cc02_g21890 |
Common Name | GSCOC_T00014839001 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
Family |
NAC |
Protein Properties |
Length: 193aa MW: 21940.5 Da PI: 4.8119 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc02_g21890 | genome | CGSC | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 120.2 | 1.9e-37 | 8 | 127 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97
lppGfrF Ptdeelv ++L++k++ +++ +vi+++d+y ++PwdL+ k+ ae ++wyf+s+r + +r+t +gyWk g d+++ls+ +g
Cc02_g21890 8 LPPGFRFYPTDEELVAHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLDGKAMAEGNKWYFYSRRTQ--------SRITGNGYWKGMGVDEPILSStSG 96
79*************************999.99**************977778899******9854........799****************99788 PP
NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128
++ g+k+ vfy g+ ++g+kt+W+m+eyrl
Cc02_g21890 97 QKLGMKRCYVFYVGEPSEGVKTNWIMQEYRL 127
99***************************98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 193 aa
Download sequence Send
to blast |
MGDNNAKLPP GFRFYPTDEE LVAHFLHRKA ALLPCHPDVI PDLDLYPYDP WDLDGKAMAE 60 GNKWYFYSRR TQSRITGNGY WKGMGVDEPI LSSTSGQKLG MKRCYVFYVG EPSEGVKTNW 120 IMQEYRLSAE NGSSGSSRSS KKRHSKIDYS KWVVCRVYER NCDNDDDDGT ELSCLDEVFL 180 SLDDLDEISL PN*
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 1e-41 | 8 | 161 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-41 | 8 | 161 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-41 | 8 | 161 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-41 | 8 | 161 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-41 | 8 | 161 | 20 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-41 | 8 | 161 | 20 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-41 | 8 | 161 | 20 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-41 | 8 | 161 | 20 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-41 | 8 | 161 | 20 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-41 | 8 | 161 | 20 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-41 | 8 | 161 | 20 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-41 | 8 | 161 | 20 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-41 | 8 | 161 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-41 | 8 | 161 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |