PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g21850
Common NameGSCOC_T00014834001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 340aa    MW: 36322.4 Da    PI: 9.1606
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g21850genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.4e-07219239627
                  -SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                  C++++  G C yG +C+F H++
  Cc02_g21850 219 CKTYSS-GSCAYGTKCRFVHDQ 239
                  999999.*************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.0E-9171206IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-5173205IPR000571Zinc finger, CCCH-type
SMARTSM003565.8174201IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.596174202IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.577213240IPR000571Zinc finger, CCCH-type
SMARTSM003560.03213239IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5214238IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-6216239IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4219239IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MENLYGGAGN SSSTRTPKLN SISGNVSPLN LNTPNFIGRG SYQHHHLRRS KSPVFDPYAS  60
SDSGSASPNL ESPLIRYLRS SSSSSGGKLL SPLAAIENFD TPASRSSPVF KTPLNIEEDV  120
LVMDGILVDS SNIKTPKGGG VARMRSPLAP LDSDGRQPSS LSSSLSSGGS ENSFYKTDKC  180
RSSEDSNAGR FGTKCQFAHG KEELRSSRIS KNKLEAQFCK TYSSGSCAYG TKCRFVHDQI  240
KAAVPSMEPS PTSKVLPTPR RAISPITLQN KADFGEKNAF TAFSTDDWSP LDDGIGVTLP  300
SGSSEKTPSK EDVNAHIQAA LYGPTPRKRL PVFTEFCPD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027106330.10.0mRNA decay activator protein ZFP36L2-like
TrEMBLA0A068TMK50.0A0A068TMK5_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77651824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.23e-07C3H family protein