PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g20240 | ||||||||
Common Name | GSCOC_T00014630001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 237aa MW: 26048.3 Da PI: 8.8058 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.4 | 6.6e-22 | 15 | 61 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+i+n snrqvtfskRr g++KKA+EL+vL++aeva+i+ s +++ Cc02_g20240 15 KKIDNLSNRQVTFSKRRVGLFKKASELCVLTGAEVAIIVQSLGKRVF 61 68*************************************99766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.0E-29 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.39 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.36E-25 | 8 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.93E-30 | 8 | 75 | No hit | No description |
PRINTS | PR00404 | 3.7E-18 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-20 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-18 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-18 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MKKKTTQGRK KIEIKKIDNL SNRQVTFSKR RVGLFKKASE LCVLTGAEVA IIVQSLGKRV 60 FAFGHPSIDA VINRYTTGSA SSSSSSSSSS SSVADPNTPL GAHEIQQHNR HYAKVSKELE 120 VERKRKELIE GSKLENGGSF WWDDPIEHMG LEELQQYKAS LEELKKKLLM RADDLMLLKN 180 SSSSSTNLGF NNSGDINPGV TAVGCDDMFF NQTTTEHCNN SIVPYGSDDF GNSLQV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1c7u_A | 3e-15 | 8 | 88 | 1 | 81 | MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM |
1c7u_B | 3e-15 | 8 | 88 | 1 | 81 | MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM |
1tqe_P | 4e-15 | 8 | 88 | 2 | 82 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 4e-15 | 8 | 88 | 2 | 82 | Myocyte-specific enhancer factor 2B |
1tqe_R | 4e-15 | 8 | 88 | 2 | 82 | Myocyte-specific enhancer factor 2B |
1tqe_S | 4e-15 | 8 | 88 | 2 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_A | 4e-15 | 8 | 88 | 2 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_B | 4e-15 | 8 | 88 | 2 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_C | 4e-15 | 8 | 88 | 2 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_D | 4e-15 | 8 | 88 | 2 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_E | 4e-15 | 8 | 88 | 2 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_F | 4e-15 | 8 | 88 | 2 | 82 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ308795 | 1e-103 | AJ308795.1 Coffea arabica microsatellite DNA, clone 23-4CTG. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027101418.1 | 1e-161 | agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_027101419.1 | 1e-161 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A068TLW8 | 1e-175 | A0A068TLW8_COFCA; Uncharacterized protein | ||||
STRING | XP_009602824.1 | 7e-74 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 9e-31 | AGAMOUS-like 62 |