PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g20230
Common NameGSCOC_T00014629001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 224aa    MW: 24812.2 Da    PI: 9.1301
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g20230genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.33e-211763349
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 ie k   qvtfskRr g+ KKA+ELS+LC++e a+i+fs+ gk++ +
  Cc02_g20230 17 IEIKNHLQVTFSKRRSGLYKKAHELSTLCGVELAIIVFSPAGKVFSF 63
                 7778888*************************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-31766IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-26779IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.441767IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-19929IPR002100Transcription factor, MADS-box
PfamPF003191.8E-231663IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-192944IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-194465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MAKKPSMGRQ KIKIAKIEIK NHLQVTFSKR RSGLYKKAHE LSTLCGVELA IIVFSPAGKV  60
FSFGHPNVDC IIDQFIARCR NPQPSSSALH LVEAHRNASS VRELNLQLTQ ILGELEVEKK  120
RGEAFDLMRK ASQNHYWWES PVNELGLHEL EQLRDSLENM KNNVTSHASK VAAEANYINS  180
SFFTLNNGAA AGLYHQHESK PAGVGVGSVH PNIFNFGYDD GGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-16794187MEF2C
5f28_B3e-16794187MEF2C
5f28_C3e-16794187MEF2C
5f28_D3e-16794187MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027101428.11e-155agamous-like MADS-box protein AGL62
SwissprotQ9FKK27e-51AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A068TMY51e-165A0A068TMY5_COFCA; Uncharacterized protein
STRINGXP_009628464.16e-99(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-53AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]