PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g19780
Common NameGSCOC_T00014553001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 413aa    MW: 45330.6 Da    PI: 4.9616
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g19780genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-093253651055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r+R ++iN+++  L++l+P+      +K++ +++Le+Av+Y+ksLq
  Cc02_g19780 325 RKRIEKINERLRILQKLIPNG-----TKVDISTMLEEAVQYVKSLQ 365
                  9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.23E-11314371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.278315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-9319369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-10321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.33E-10324369No hitNo description
PfamPF000105.7E-7325365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MESFGAMGCG DWSSCNAIYS STTEEADFMA RLLGNISLPN DVPNSSNAKF SSTYWPASES  60
DVNKAVFQED SSINSSDDTS VDADVCYSFS QGSSFSGEGS SILCPLSQIY FCNSNSIISQ  120
PIVTRNDSSV CADYAMMECK NKMDSCDHEI IRINNILMEE GRDFLNQDVS SDCSMESGEN  180
DMPEAFSRGM ILQQGKDQHE INSLASTKSL EDESDNLLES SKKRPSTPLD VHKNKRMINA  240
KTNHQKLHPY DSKIAEGGHP VLCRQSSSSC LSEDDSNVFH ESNAGVLPIP ASCSDSKGAI  300
TAFNLNGKTR ASRGSATDHQ SLYARKRIEK INERLRILQK LIPNGTKVDI STMLEEAVQY  360
VKSLQLQIKT KTIYFCLSVT KGYHSVCSLL SSDDLWMYAP IAYKGKNLGL LL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027112632.10.0transcription factor bHLH85-like
TrEMBLA0A068TMV80.0A0A068TMV8_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-44bHLH family protein