PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g18680
Common NameGSCOC_T00014419001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 321aa    MW: 36310.8 Da    PI: 9.6813
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g18680genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.98e-18112201198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f+k ++ps+v+ s +l++p+kf + h +++ ++ t++l de+g++++ ++ +++++    l++GW++F  +++L  gD+++F+l+g+ +   +v+++r
  Cc02_g18680 112 FLKCMLPSNVTYSFWLIIPRKFGSLH-LPS-RDSTVILVDEWGKEYKTTYLIDRNG----LSAGWRGFSMSHRLLKGDILIFRLIGHCKL--KVHIVR 201
                  89*********************777.443.4559***************888888....*************************96666..787776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-23105202IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-19105201IPR015300DNA-binding pseudobarrel domain
CDDcd100173.90E-24110201No hitNo description
SMARTSM010194.9E-18112203IPR003340B3 DNA binding domain
PfamPF023625.8E-15112201IPR003340B3 DNA binding domain
PROSITE profilePS5086312.689112203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEAEKLIGEQ QNQKEHRAQN CIENEQTSVK RRKRKKKDEM PMEKKKKVIA GNPKAPKSKS  60
KKVASDTGKN SRCIKRKRTG MNEIYDDVES KFTVMERAAK VLASMEDGAP YFLKCMLPSN  120
VTYSFWLIIP RKFGSLHLPS RDSTVILVDE WGKEYKTTYL IDRNGLSAGW RGFSMSHRLL  180
KGDILIFRLI GHCKLKVHIV RVHGLDVVNA AACLMNLDAF GTMDSDPVKQ DYRKRKRTKK  240
YADCSVFDAP RIPDKVQEKG KMVLKSDLVP VEDQSENTSD GFGSEVLEGS GMTDHLLSGD  300
HHHTEASFLH EHPCEGVVCR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13036RRKRKKK
23037RRKRKKKD
33046RRKRKKKDEMPMEKKKK
43135RKRKK
53137RKRKKKD
63246KRKKKDEMPMEKKKK
7232239RKRKRTKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027105926.10.0B3 domain-containing protein Os06g0194400-like isoform X1
TrEMBLA0A068TMJ00.0A0A068TMJ0_COFCA; Uncharacterized protein
STRINGXP_009772548.11e-87(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-30B3 family protein