PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g17450
Common NameGSCOC_T00014261001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 98aa    MW: 10704.8 Da    PI: 10.1398
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g17450genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.1e-092266344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT++  +l+ +a +q+ ++   +W  +ar +g g+++ ++k ++
      Cc02_g17450 22 AWTPQQNKLFEKALAQYDKEtpdRWQNVARVVGGGKSADEVKRHY 66
                     6******************9************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.7861874IPR017884SANT domain
SMARTSM007171.8E-71972IPR001005SANT/Myb domain
SuperFamilySSF466895.83E-122277IPR009057Homeodomain-like
PfamPF002494.6E-72266IPR001005SANT/Myb domain
CDDcd001677.84E-62366No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MASSSLSSRR TGSSSSSSSA AAWTPQQNKL FEKALAQYDK ETPDRWQNVA RVVGGGKSAD  60
EVKRHYEILV EDVRRIETGR VPYPNYTTTR GTTAIPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-291491278RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230980.12e-39protein RADIALIS-like 4
RefseqXP_011092801.12e-39protein RADIALIS-like 1
RefseqXP_016582408.13e-39PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1737e-32RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A068TLC48e-65A0A068TLC4_COFCA; Uncharacterized protein
STRINGSolyc01g109690.1.17e-39(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-31RAD-like 1