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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g17440 | ||||||||
Common Name | GSCOC_T00014259001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 433aa MW: 47647.4 Da PI: 6.7472 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.7 | 5.7e-10 | 241 | 288 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Cc02_g17440 241 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 288 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.29E-10 | 235 | 292 | No hit | No description |
SuperFamily | SSF47459 | 6.54E-17 | 235 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-17 | 237 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.618 | 237 | 287 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-7 | 241 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-9 | 243 | 293 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MSVLERQEAI WMKWQEEQLH HPPPLPLQVR QLGHDFFNST DQLNVFSSPA QAHHHFHGFI 60 TNDHHFSGLL TQGILKQDPG VQTTTGCDNF TNIGGPSAGL GACELGNITG FGMDYAVSRT 120 VSCPPAMAAA MADVATAASK GRETTLPEKL SSSAGRESFK KRKADKTQNQ KEATEQEGKD 180 KRSRGCQKEE DSKVTEQKST SKNTATNNTI NREASENSKI SEVQKPDYIH VRARRGQATD 240 SHSLAERVRR EKISERMKYL QDLVPGCNKI TGKAGMLDEI INYVQSLQRQ VEFLSMKLAA 300 INPRLDFNIG DISTKEIFAV GTSELHTIGS TSEIINPLNY PFDSIQQVVS CCGLETGADP 360 SEMALRRTIS APVSIHETLR DSPYFSQIHP SSTWDAELQS LYALEFQQGK STSLLSQPCT 420 GYLGGSNVKM EI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027105745.1 | 0.0 | transcription factor bHLH63-like isoform X3 | ||||
Refseq | XP_027112243.1 | 0.0 | transcription factor bHLH63-like isoform X3 | ||||
TrEMBL | A0A068TL36 | 0.0 | A0A068TL36_COFCA; Uncharacterized protein | ||||
STRING | XP_008236908.1 | 1e-138 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6538 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 3e-58 | cryptochrome-interacting basic-helix-loop-helix 1 |