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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cc02_g15530 |
Common Name | GSCOC_T00014005001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family |
MYB |
Protein Properties |
Length: 391aa MW: 43951.7 Da PI: 7.5876 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc02_g15530 | genome | CGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 49.1 | 1.3e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT+ Ed++l d++k +G g W++ +r+ g++R++k+c++rw +yl
Cc02_g15530 14 RGAWTPLEDKILTDYIKSHGVGKWASLPRRAGLKRCGKSCRLRWVNYL 61
89********************************************97 PP
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2 | Myb_DNA-binding | 38.1 | 3.5e-12 | 67 | 161 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT..................................................-HHHHHHHHTTTS-HHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..................................................tWktIartmgkgRtlkqcksrw 44
rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w
Cc02_g15530 67 RGNITDDEEDLIIRLHKLLGNRpatllgrrnlpvflpripvhvnfqtyhkkkkkklftllicivwdfkesvqEWSLIAGRLP-GRTDNEIKNYW 159
7999******************************************************************************.*********** PP
HH CS
Myb_DNA-binding 45 qk 46
++
Cc02_g15530 160 NT 161
96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 391 aa
Download sequence Send
to blast |
MGRRPCCAKE GLNRGAWTPL EDKILTDYIK SHGVGKWASL PRRAGLKRCG KSCRLRWVNY 60 LRSDIKRGNI TDDEEDLIIR LHKLLGNRPA TLLGRRNLPV FLPRIPVHVN FQTYHKKKKK 120 KLFTLLICIV WDFKESVQEW SLIAGRLPGR TDNEIKNYWN TKIVKKIQGR QHLPACSSAP 180 LTKPSSSRSR SPPLLQNLTR TDQPPNSEKL ELESCTHVIR TKARRLTKVF IDEDLQTSAG 240 TQQPGIIAPA EAQAPPSSAD AKENFNKTPT DHNNTVGAEQ PLGAVMESPS TFSGEEGYSS 300 SSGFMMDFEM DDKYLFDFLS TDVVQFTHDF FEGVVQGTNI ETNHEVETND FPPNSCPTAL 360 SHDDDDDHNL ADLGSITTFL HPALAWFHED *
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