PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g14830
Common NameGSCOC_T00013905001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 268aa    MW: 29206.2 Da    PI: 8.4809
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g14830genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.7e-1379126355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ++h+e+ErrRR+riN  +++Lr l+P++     +K++Ka+ L +++  +k+Lq
  Cc02_g14830  79 KSHSEAERRRRERINAHLATLRGLVPPN-----EKMDKATLLAEVISQVKQLQ 126
                  58************************98.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.9176125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1079126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-1479134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-1479134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-1382131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.0011589127No hitNo description
CDDcd048731.40E-6164231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSLYSEAPVK RSTIGEDCGR QFDQFPGDIG GIGGNLGSKS MSGSQSLVLD GERGELVKSC  60
GRVGKKGEAS EAKTIAALKS HSEAERRRRE RINAHLATLR GLVPPNEKMD KATLLAEVIS  120
QVKQLQKTTT QISERFCIPL DSDEVRVEQL DEISVEGTFN FKASLCCDYR PGLLSDLKKA  180
IGSLPLTLMR SEISTLGGRL MNVLFFTSSR RGDIGSAEDR KQLVNSVHQA LSSILDKFAE  240
STDCLPQTMY SNKRQRVSYF VSSCSSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18489ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027105500.10.0transcription factor bHLH30-like
TrEMBLA0A068TLI30.0A0A068TLI3_COFCA; Uncharacterized protein
STRINGSolyc02g076920.2.11e-80(Solanum lycopersicum)
STRINGPGSC0003DMT4000264492e-80(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67302230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-34bHLH family protein